RNA id: TU1944753


Basic Information

Item Value
RNA id TU1944753
length 359
lncRNA type read_through
GC content 0.42
exon number 2
gene id G1699546
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1312779 ~ 1384859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTAAGATAAATATTGCACCGTTATACTGTAGCATTCCACAGTACGGTTCCAGATTCCACATGGAGCAAACACAGTATTTTGATACAAAATATTCAGACATATTATAAGATCACTTTATTGAGGTTTAACTGTTGTTCTTCTTTTCCAACATAAGTCGTTTTTCTGGTTTGATTTGACCTTCCTAAAGCCACGTCGGAGAGAGATTATTGTTTACCTGGTATGGATAACAGAACACCGAGGATGAGTAGTTGACTATTGGTGATGAAGAGGGGTTTGTGTGACTATCAAAGTCATAAATagtttgggtgggggggggggggggggggggagctgatcctagacctgtaccTAGAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944774 lncRNA upstream 3339 1311040 ~ 1311740 (+) False G1699552
TU1944773 lncRNA upstream 3339 1311255 ~ 1311740 (+) True G1699552
TU1944775 lncRNA upstream 5929 1308829 ~ 1309150 (+) True G1699553
TU1944755 lncRNA upstream 6335 1307812 ~ 1308744 (+) True G1699547
TU1944759 lncRNA upstream 7798 1306199 ~ 1307281 (+) True G1699548
TU1945035 lncRNA downstream 327 1385186 ~ 1386191 (+) True G1699744
TU1945053 lncRNA downstream 42309 1427168 ~ 1428192 (+) True G1699761
TU1945065 lncRNA downstream 57335 1442194 ~ 1500372 (+) True G1699768
TU1945078 lncRNA downstream 65620 1450479 ~ 1451361 (+) True G1699773
TU1945085 lncRNA downstream 88377 1473236 ~ 1473963 (+) True G1699777
XM_036956550.1 mRNA upstream 9176 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 92021 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 99168 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 104834 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 132503 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 132610 1517469 ~ 1600082 (+) False LOC110517600
TU1944767 other upstream 10346 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 214858 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 229053 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1173830 60319 ~ 141249 (+) True LOC118942820
TU1945115 other downstream 153097 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 280897 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 373610 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 482835 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 482835 1867694 ~ 1869554 (+) False G1699934

Expression Profile