RNA id: TCONS_00050775


Basic Information

Item Value
RNA id TCONS_00050775
length 1185
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_025906
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62271320 ~ 62276177 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgagtgatccagaaccctgcagaattaaacatgaAGACACTGAACAACAAATAGacctaattgaagagaatgaggcgACTAAAGAGGAGGAACaccatgtcaaaattgaggacaaaactcAATTACAagctgatggtattttgaaaaggagagacaagaattgtttcacctgcactcagtgtgggaagagtttcagacaatcatcatcccttaatagaCACgcgaagatccacactggagagaatcTATTCACTTGCACccagtgtgagaagagtttcagccaatcatcagcCCTTACTCTACACATgaggagccacactggagagaaaccatacacatgtgctcaatgtgggaagagtttcagccaattatcagcccttaataaacacaataaaatccacactggagagaaaccattcacttgcacccagtgtggaaagagctttagCCAATCATCGTCACTTAAtgtacacatgaggatccactctggagagaaaccattcacatgcactctgtgtgggacgagtttcaaccaaatatcagcccttaataaacacaaaaaaatccacactggagagaaaccacacGCATGCACTCAGTGCGGGAAGAgattcagccaatcatcaaaccttaatcagcacatgaggatccacactggagagaaaccgttcacatgcactcagtgtgggaagagtttcagccactcgTCATCCCTTAAactacacatgatgatccacactggagagaaatcaTTTACATGCACCCAGTGCGGGATgagtttcagccaatcaccaTCCCTTTATAGACACCtaaagacccacactggagagaaaccattcatatgcactcagtgtggaaagagtttcagccagtcagcacaccttaatctacacatgaagatccacactggagagaagccattcacatgcactcagtgtgggaagagtttcaaccaatcatcagaccttaataaacacatgattattcacactggagagaaaccattaatATGTacacagtgtgggaagagtttcagctgctcatcaaaccttaataaacacatgaggatccacactggagagaaaccgtacacatgctctcagtgtgggaagagtttcagccaatcatcaacccttaatcaacacatgaagagCCACACTGGTGTGGGAGTCTATGCGTCTTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080516-3 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000132197

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052869 lncRNA upstream 29404 62228510 ~ 62241916 (+) False XLOC_025904
TCONS_00052396 lncRNA upstream 38081 62207834 ~ 62233239 (+) False XLOC_025904
TCONS_00052866 lncRNA upstream 209482 62054694 ~ 62061838 (+) False XLOC_025898
TCONS_00052397 lncRNA downstream 27865 62304042 ~ 62306549 (+) True XLOC_025908
TCONS_00052870 lncRNA downstream 92547 62368724 ~ 62384693 (+) True XLOC_025913
TCONS_00052871 lncRNA downstream 148158 62424335 ~ 62489117 (+) False XLOC_025914
TCONS_00052872 lncRNA downstream 148158 62424335 ~ 62497938 (+) False XLOC_025914
TCONS_00052873 lncRNA downstream 148232 62424409 ~ 62489117 (+) False XLOC_025914
TCONS_00050774 mRNA upstream 20746 62236443 ~ 62250574 (+) True XLOC_025904
TCONS_00050770 mRNA upstream 28110 62216727 ~ 62243210 (+) False XLOC_025904
TCONS_00050773 mRNA upstream 28110 62236443 ~ 62243210 (+) False XLOC_025904
TCONS_00050771 mRNA upstream 31201 62217479 ~ 62240119 (+) False XLOC_025904
TCONS_00050772 mRNA upstream 44730 62219158 ~ 62226590 (+) True XLOC_025905
TCONS_00050776 mRNA downstream 13847 62290024 ~ 62297374 (+) True XLOC_025907
TCONS_00050777 mRNA downstream 41813 62317990 ~ 62324799 (+) True XLOC_025909
TCONS_00050778 mRNA downstream 51155 62327332 ~ 62329712 (+) True XLOC_025910
TCONS_00050779 mRNA downstream 63087 62339264 ~ 62346128 (+) True XLOC_025911
TCONS_00050780 mRNA downstream 77473 62353650 ~ 62360828 (+) False XLOC_025912
TCONS_00050717 other upstream 3560565 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 4100906 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 4272761 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 4441401 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 4631872 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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