RNA id: TU1945003


Basic Information

Item Value
RNA id TU1945003
length 1805
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G1699730
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1352939 ~ 1354797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTATCGTCTGTTGGGGTGCGCTTGCACCAGTGCTGGGCTGGGGTGAATACGAACATCACCTTATCCTGGCTGACACCactggggacagggacagggctggggacagggctggggacagggacagggctggGGACAGGGACACAGCTCTCCTCCCACCAGTCCAACTCTATCACGTTCTTACAGCCACAGCTCTGCATCCAACCCTGGAGCCCCAGAGGGACAAACCAACGCAGCTCGGCGCCGAAGCGCTTATTGAGGCTGCTAACTGAACCTACGTCCAGGTGGTCGTAGTGGGTGTGGCTGATGAGCACAGCATCCACCTGGAAGAAGAAAACTGTATCAACTGGAAAAGTCCACGGAGATGTGTTATCTTTTTTTTTATAccgttgacacacacacacacacacacacacacacacacacacacgtctctcaaGTGTTTGGAGGCACCTCACCTTGGGTAGTTGATCTACTGTACACGGCGGGCCCCTGAACCTCTTGGGCCCCATGAACTGGAAGGGAGACGCCCTCTGGCTGAAGATGGGGTCAGTGAGGATGACCAGGCCGTCCATCTCTACCAGGACTGATGCGTGGCCCAGCCAGGTCACCCTGAGACCAGACCCCACGGTTCCTGACACCTGTGGTGTCAtgttatatatatacaggaccagtcaaaagtgtggacctACTAATTCCAGCCGCTTTTCTTTATATTCACTCTTCTCTAcaagatgaaataacacatatggaattatgtagtgaccaaaaataaaagtgttaaacaaatctaaatatatttttagattttgaaagtcttcaaagtagccacccgttcgttaccttgatgacagtgttgcacactcttggcattctctcaaccagcgtttATGCCACATATGTGTATGCGGTATATTATTGTTGAATTGATCTGTTGTTTTCATGGACTCCTGGGAACAGTATTGCATACTAAAAAGAGATAGACAAGACACAACAACATGGAAACAAACCTCAGGACTCTGGATGAAGGACGGTTTCAGCAGTGGAAGCTCACGGTCTAACTCCTCAAACACAGGGACACACAAACGGTTGGTTTATAACAACAAATACCTGGCTGAAAAGGACTCAGCACACCTCTGATGAAAGCACTTCAACTCCTTGTCTGAGGTTGAAATACATCAGGTCTAAATGAATAGAATTGCATGAGGTTGTCATGCATCATCTACTAGGATACATTTCTATACAAATTGCTAATGGAATGTAGAATTAAcaagcaacaacaacaaggcaAAAAGCCAATAGGTTAAAGATGGGATTCGTACCTCTTTGGAGCGGGGTAGGTTGCTGTGGTCCTTATCTAGTAGATAGAACCGGAGCAGGGAGGCAGAGGAGGGGTAGTGCCATGTGGGCCAGGGGTTGGTGAAGCGACCGTTCTTCTCCCTCGTGGATCTGGTTATGACTTCTCCCTTCTCCACATCTTGACCTTCCCCGAAAGTCCCCCCTGTCCCCCGGTGGTTCAGGGATGGCGTGTTGGGTGTTCGTGGTTCCTCTCCTGTCCCCCGGGCTTCCCCCTGCTCTGCCATGGCCTCAAGTCCCTGTTCCTCTGGTCTGTGTGGGACACAACATCAAGTTCTGCAGTTGTTGTGGTGCTATATCTCTTGACAGAAGTTATGTGAGTCAACTGGACAGATTTTTCAGACGGGTGCTTCATAAATGTAGAGCTGAAAACCCAAACCAGGAAGTAGAGCTGAAAACCCAAACCAGGAAGTTGGACCCATAAGGTTATTGCTCTATAAAGTCATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1944989 lncRNA upstream 29121 1321969 ~ 1323818 (+) True G1699721
TU1944988 lncRNA upstream 31037 1321354 ~ 1321902 (+) True G1699720
TU1944751 lncRNA upstream 36542 1314392 ~ 1316397 (+) False G1699546
TU1944746 lncRNA upstream 36978 1314392 ~ 1315961 (+) False G1699546
TU1945006 lncRNA downstream 616 1355413 ~ 1357029 (+) False G1699731
TU1945007 lncRNA downstream 616 1355413 ~ 1357029 (+) False G1699731
TU1945008 lncRNA downstream 616 1355413 ~ 1357029 (+) False G1699731
TU1945009 lncRNA downstream 616 1355413 ~ 1357029 (+) True G1699731
TU1945012 lncRNA downstream 5623 1360420 ~ 1361038 (+) True G1699732
XM_036956550.1 mRNA upstream 47036 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 122083 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 129230 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 134896 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 162565 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 162672 1517469 ~ 1600082 (+) False LOC110517600
TU1944994 other upstream 9801 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 48206 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 252718 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 266913 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1211690 60319 ~ 141249 (+) True LOC118942820
TU1945115 other downstream 183159 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 310959 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 403672 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 512897 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 512897 1867694 ~ 1869554 (+) False G1699934

Expression Profile