RNA id: TU1945006



Basic Information


Item Value
RNA id TU1945006
length 742
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G1699731
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1355413 ~ 1357029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAGTGAAGAGGTCTCTCCTGCACCTTATCCTGGCCCAGTGAAGAGGTCTCTCCTGCACCTTATCCTGGTCCAGTGAAGAGGTCTCTCCTGCACCTTATCCTGGTCCAGTGAAGAGGTCTCTCCTGCACCTTATCCTGGCCCAGTGAAGAGGTCTCTCCTGTACCTTATCCCGGTCCAGTGAAGAGGTCTCTCTTGCACCGTATCCTGGTCCAGTCAAGAGGTCTCTCCTGCACCTTATCCCTGCCCAGTCAAGAGGTCTCTCCTGCACCGTATCCTGGTCCAGTCAAGAGGTCTCTCCTGCACCTTATCCCTGCCCAGTCAAGAGGTCTCTCCTGCACCGTATCCTGGTCCAGTCAAGAGGTCTCTCCTGCACCTTATCCTGGTCCAGTCAAGAGGTCTCTCCTGCACCTTATCCTGGTCCAGTCAAGAGGTCTCTCCTGCACCTTATCCTGGTCCAGTGAAGAGGTCTCTCCTGCACCTTATCCTGGCCCAGTGAAGAGGTCTCTCCTGCACCTTATCCTGATCCAGTCAAGAGGTCTCTCCTGCACCTTATCCTGGTCCAGTCAAGAGGTCTCTCCTGCAGGGATTAGAGACGAGCGTAGACCACCTCTAAACAACGACCTCCTCGTGTACGGTAAGACCAGCCAGTCCAGTTCTCCCGAGAGCATTTTGTTTCACACAATTCTTCCTCGTTGCACTTTGTTACTCAGAATGAAGTCTGTCCATATCAATGATTGCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1945003 lncRNA upstream 616 1352939 ~ 1354797 (+) True G1699730
TU1944989 lncRNA upstream 31595 1321969 ~ 1323818 (+) True G1699721
TU1944988 lncRNA upstream 33511 1321354 ~ 1321902 (+) True G1699720
TU1944751 lncRNA upstream 39016 1314392 ~ 1316397 (+) False G1699546
TU1944746 lncRNA upstream 39452 1314392 ~ 1315961 (+) False G1699546
TU1945012 lncRNA downstream 3391 1360420 ~ 1361038 (+) True G1699732
TU1945024 lncRNA downstream 7949 1364978 ~ 1365621 (+) True G1699736
TU1945035 lncRNA downstream 28157 1385186 ~ 1386191 (+) True G1699744
TU1945053 lncRNA downstream 70139 1427168 ~ 1428192 (+) True G1699761
TU1945065 lncRNA downstream 85165 1442194 ~ 1500372 (+) True G1699768
XM_036956550.1 mRNA upstream 49510 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 119851 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 126998 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 132664 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 160333 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 160440 1517469 ~ 1600082 (+) False LOC110517600
TU1944994 other upstream 12275 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 50680 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 255192 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 269387 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1214164 60319 ~ 141249 (+) True LOC118942820
TU1945115 other downstream 180927 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 308727 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 401440 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 510665 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 510665 1867694 ~ 1869554 (+) False G1699934

Expression Profile