RNA id: TU1946302


Basic Information

Item Value
RNA id TU1946302
length 2035
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1700726
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1357564 ~ 1359669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtcctgaaagtaacctggtcccagacctgtttgtgtcagtctgtgtcatgacaaggagttacactgtgtcctgaaagtaacctggtcccagacctgtttgtgccagactgtgtcatgacaaggagttacactgtgtcctgaaagtaacctggtcccagacctgtttgtgccagtctgtgtcatgacaaggagttacactgtgtcctgaaagtaacctggtcccagacctgtttgtgccagTCTGCGTCATGACAAGGAGTTACACTGTGTCCTGaaagtaacctggtcccagacctgtttgtgccagTCTGCGTCATGACAAGGAGTTACACTGTGTCCTGaaagtaacctggtcccagacctgtttgtgccagtctgtgtcatgacaaggagttacactgtgtcctgaaagtaacctggtcccagacctgtttgtgccagTCTGTGTCATGATGGCACAagcagactggtacccaggctatactGAAAGGGGAGCGATGGTACCAGGTACACACCAATATAACACTATTTTATTCCTGAGGTCATTTGATACCTAATTAAAGAAGGGAGTGAAACACCTTGacttctagcctggtcccagatcagtctGTGCTCTTGTCTACTCCTTCgctgtcattgtcaagccaaacaaaTGAGTGACAGGGCGTTGccatgacggcacaaacagactggtacccaggctacctGTTATTCCCGAGTGCCTGTGTAAGTTTAGCTTGCAGGTGATGTgccaaacagactggtacccaggctacctGTTATTCCCGATTGCCTGTGTAAGTTTAGCTTGCAGGTGATGTGCCAAACAGCGAGGTCTCTTTGAATGACGGACCtcaccaatctctctctctctcggtaccAATCTTTTACAGTGCTGATCATAAACTGAAATGGTGTTGAAGTCAACACTCGTGTCACTATTTGAAGCTGACTTCCTTGTTGCCCTAATGGCTGTGGACTCCAATAGGTGTGTTGTGTTAGTGGGCCtaccagggttgggctcaattccatttcaatcccAGTCGATTCAGGTAggacactgaaattccaattctcttcgATGCTTTTCAACGAGGAACATGTGGAATTGGAACTTTCTGAATTGACgggaatggaattgaccccaagccTGGAGTCTTCGGCCATGTCTTCGGGGTCAACGTCTTGGTACACCACAGTCACTTTAGCCACTACTAGTGTACAGACAGATGGGGTGTATGTATAAATGCCAAATGAGAATGTTCCACAATGCAGCTGTACTAATGGGTTTGTTCATGCTGGCTGTACTGAAAGTACCCAAATCCCATCGTTGGTGTTCCTGTGTGACATCATCATGTTCCAGGTTCCTTCCAGCAGGTTTGGGGTCCCGTTTATTTCACTATACAGTCAATTCAGAGAGTCAATTTGAAATTTGAGTTTTGTTTTCCTGGATGGACAGAACGGATAGGGAATTGACCCCCGACCCTGCAAACAATAGTCCATTTGTACAGGGGCCCCCTGGTGGTTGTTGTAGGATGTCTTCGTTCAGTCTGAATTTTCCTTCCGAACGTCGTTGTGAACAAGGAAAACAGAAAAGCACAGTGTTTCCCACAGCATGCTGTCCGACAGCCATGTTTCATAGGAGGAGTTTGGGTTCCAAAGTGTCGTCTTCTGTTACCTGTTCTCTcattgtatcatattgtacaaatCATTATTATTGGGTACTAACTTGCATTATATTTTTTTTCTACCTACATTTTAAAAGAGTTCGTAAACTATAGGAATTGTACAAAAAGTACTTTAATAGATATTGTTTATTAAAGAAAGGAACTGTTAGTGGGGAAAAATAGATTATTTGCCAAACTCCTTTTTTCAATTCTAGAATATGATGATTTTCACGGAGTTCTAGAATGGGTTCCGTTGGTTCCATTTACGATGTAAACATTCCTTACTTCCACTGTTTTGGTCTCAGAACACCAGACACTATAAAGAACTACGCAGTGAATGAAACAATTCACTACTCACTGGGCACA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946282 lncRNA downstream 41614 1312956 ~ 1315950 (-) True G1700712
TU1946248 lncRNA downstream 74495 1281085 ~ 1283069 (-) True G1700697
TU1946204 lncRNA downstream 151899 1205145 ~ 1205665 (-) True G1700658
TU1946158 lncRNA downstream 219893 1124574 ~ 1137671 (-) True G1700621
TU1946148 lncRNA downstream 253716 1098247 ~ 1103848 (-) True G1700612
TU1946255 lncRNA upstream 56999 1416668 ~ 1485260 (-) True G1700701
TU1946277 lncRNA upstream 82528 1442197 ~ 1500408 (-) False G1700710
TU1946278 lncRNA upstream 82528 1442197 ~ 1500408 (-) True G1700710
TU1946286 lncRNA upstream 95051 1454720 ~ 1513068 (-) True LOC110499704
TU1946258 lncRNA upstream 126372 1486041 ~ 1487164 (-) True G1700702
XM_036956558.1 mRNA downstream 533 1348599 ~ 1357031 (-) False LOC110527029
XM_036956559.1 mRNA downstream 533 1348599 ~ 1357031 (-) False LOC110527029
XM_036956560.1 mRNA downstream 533 1348599 ~ 1357031 (-) False LOC110527029
XM_036956562.1 mRNA downstream 533 1348599 ~ 1357031 (-) True LOC110527029
XM_036956561.1 mRNA downstream 2584 1348599 ~ 1354980 (-) False LOC110527029
XM_036956564.1 mRNA upstream 3560 1363229 ~ 1380149 (-) False LOC118942825
XM_036956563.1 mRNA upstream 3560 1363229 ~ 1446417 (-) False LOC118942825
XM_036956572.1 mRNA upstream 89135 1448804 ~ 1453875 (-) False LOC110499705
XM_036956573.1 mRNA upstream 89135 1448804 ~ 1453886 (-) True LOC110499705
XM_036956565.1 mRNA upstream 94897 1454566 ~ 1476517 (-) False LOC110499704
TU1946269 other downstream 34201 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1003055 352487 ~ 354509 (-) True G1700312
TU1946284 other upstream 9480 1369149 ~ 1445876 (-) True LOC118942825
TU1946685 other upstream 762860 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 828764 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1213005 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1424273 2783942 ~ 2829582 (-) True G1701930

Expression Profile