RNA id: TU1945012


Basic Information

Item Value
RNA id TU1945012
length 284
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1699732
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1360420 ~ 1361038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatgacacagactggcacaaacaggtctgggaccaggttactttCAGGACACAGTGTAACTCCTTGTCATGACGCAGActggcacaaacaggtctgggaccaggttactttCAGGACACAGTGTAACTCCTTGTCATGACGCAGActggcacaaacaggtctgggaccaggttactttcaggacacagtgtaactccttgtcatgacacagactgacacaaacaggtctgggaccaggttactttcaggacacagtgtaactccttgtcatgacacagactg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945006 lncRNA upstream 3391 1355413 ~ 1357029 (+) False G1699731
TU1945007 lncRNA upstream 3391 1355413 ~ 1357029 (+) False G1699731
TU1945008 lncRNA upstream 3391 1355413 ~ 1357029 (+) False G1699731
TU1945009 lncRNA upstream 3391 1355413 ~ 1357029 (+) True G1699731
TU1945003 lncRNA upstream 5623 1352939 ~ 1354797 (+) True G1699730
TU1945024 lncRNA downstream 3940 1364978 ~ 1365621 (+) True G1699736
TU1945035 lncRNA downstream 24148 1385186 ~ 1386191 (+) True G1699744
TU1945053 lncRNA downstream 66130 1427168 ~ 1428192 (+) True G1699761
TU1945065 lncRNA downstream 81156 1442194 ~ 1500372 (+) True G1699768
TU1945078 lncRNA downstream 89441 1450479 ~ 1451361 (+) True G1699773
XM_036956550.1 mRNA upstream 54517 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 115842 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 122989 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 128655 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 156324 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 156431 1517469 ~ 1600082 (+) False LOC110517600
TU1944994 other upstream 17282 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 55687 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 260199 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 274394 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1219171 60319 ~ 141249 (+) True LOC118942820
TU1945115 other downstream 176918 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 304718 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 397431 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 506656 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 506656 1867694 ~ 1869554 (+) False G1699934

Expression Profile