RNA id: TU1945024


Basic Information

Item Value
RNA id TU1945024
length 334
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G1699736
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1364978 ~ 1365621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccCCTGCTCGGCCTGTATCAGCAACatcTTCCAACTAAATACAAAGAGAAAACAACAACTCGTTGAGAAATAATCTGATCGTACAACGACAACCAAGTCAACGCTTCTCAGTCAGAGGCATTGAACGATAATGACGATAATAACAGTTCTCCACCAGGGGCCATGACTAAAGGGCTGTTTTCTCACCGACTGGTCTGAGACCAGGAGGGGGTGTGATGACTCCTCTCCCACTGAGGGCAGCCTGGCGCTGCCTACAGACGGGTGTCGGCTAGAAGGGCGCGACGAGGCCTCACCAAACGACGGGTAGCGCCCTATACCGTTCGGTAACGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945012 lncRNA upstream 3940 1360420 ~ 1361038 (+) True G1699732
TU1945006 lncRNA upstream 7949 1355413 ~ 1357029 (+) False G1699731
TU1945007 lncRNA upstream 7949 1355413 ~ 1357029 (+) False G1699731
TU1945008 lncRNA upstream 7949 1355413 ~ 1357029 (+) False G1699731
TU1945009 lncRNA upstream 7949 1355413 ~ 1357029 (+) True G1699731
TU1945035 lncRNA downstream 19565 1385186 ~ 1386191 (+) True G1699744
TU1945053 lncRNA downstream 61547 1427168 ~ 1428192 (+) True G1699761
TU1945065 lncRNA downstream 76573 1442194 ~ 1500372 (+) True G1699768
TU1945078 lncRNA downstream 84858 1450479 ~ 1451361 (+) True G1699773
TU1945085 lncRNA downstream 107615 1473236 ~ 1473963 (+) True G1699777
XM_036956550.1 mRNA upstream 59075 1156714 ~ 1305903 (+) False LOC110518351
XM_036956571.1 mRNA downstream 111259 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA downstream 118406 1484027 ~ 1484168 (+) True LOC118943024
XM_036956574.1 mRNA downstream 124072 1489693 ~ 1500056 (+) True LOC110499710
XM_036956577.1 mRNA downstream 151741 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA downstream 151848 1517469 ~ 1600082 (+) False LOC110517600
TU1944994 other upstream 21840 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 60245 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 264757 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 278952 1082691 ~ 1086026 (+) True G1699629
TU1944334 other upstream 1223729 60319 ~ 141249 (+) True LOC118942820
TU1945115 other downstream 172335 1537956 ~ 1538880 (+) True G1699804
TU1945155 other downstream 300135 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 392848 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 502073 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 502073 1867694 ~ 1869554 (+) False G1699934

Expression Profile