RNA id: TU1946278


Basic Information

Item Value
RNA id TU1946278
length 330
lncRNA type read_through
GC content 0.40
exon number 2
gene id G1700710
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1442197 ~ 1500408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACTCACAAAATGATGCAACAAAAAAACACGTGATTGCATTTAAACAATTATTTATTAACTTTAGTAGAATGGAAATGCATGAATTGTTCTCAAAAGATGCCAGACAGCCACTGATAAATCTGGACAGACAAACGTTCAGCCTTCCCATGAAGCACTTCTGTCTCAGTGATGATGACAGGAGGTGCAGCATGGTGATTCCATGCATCGCTTCATCCACTCTTCTATCACTATTCTTCTATCactatccttccttccttccttccttccttccttccttccttccttcctttctttctttatttctctctttctttctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946302 lncRNA downstream 82528 1357564 ~ 1359669 (-) True G1700726
TU1946296 lncRNA downstream 82923 1357564 ~ 1359274 (-) False G1700726
TU1946282 lncRNA downstream 126247 1312956 ~ 1315950 (-) True G1700712
TU1946248 lncRNA downstream 159128 1281085 ~ 1283069 (-) True G1700697
TU1946204 lncRNA downstream 236532 1205145 ~ 1205665 (-) True G1700658
TU1946349 lncRNA upstream 4097 1504505 ~ 1504791 (-) True G1700766
TU1946362 lncRNA upstream 37383 1537791 ~ 1538979 (-) True G1700778
TU1946391 lncRNA upstream 92812 1593220 ~ 1593454 (-) True G1700800
TU1946396 lncRNA upstream 97014 1597422 ~ 1647912 (-) False G1700802
TU1946395 lncRNA upstream 97780 1598188 ~ 1647912 (-) True G1700802
XM_036956564.1 mRNA downstream 62048 1363229 ~ 1380149 (-) False LOC118942825
XM_036956558.1 mRNA downstream 85166 1348599 ~ 1357031 (-) False LOC110527029
XM_036956575.1 mRNA upstream 23 1500431 ~ 1516184 (-) True LOC110511332
XM_036956587.1 mRNA upstream 363566 1863974 ~ 1985304 (-) True ptprbl
XR_005038453.1 mRNA upstream 485502 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 491069 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 491069 1991477 ~ 2085804 (-) False LOC110499711
TU1946269 other downstream 118834 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1087688 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 622121 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 688025 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1072266 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1283534 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1728594 3229002 ~ 3230041 (-) True G1702117

Expression Profile