RNA id: TU1946341


Basic Information

Item Value
RNA id TU1946341
length 252
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1700760
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1491453 ~ 1492356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAGAAATGTAGAGGTCGGACTTCAACACAGTGACACAATAAAAGTACGATACGTGTTTTGATGTTTTTCAATATACTGGACTGATgattgtttttctctctccatatAATACACCAGATACCACAACAgagtcccttgttctctctccctataATACACCAGACACCACAACAgagtcccttgttctctctccataTAATACACCAGATACCACAACAgagtcccttgttctctctccataTAATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946258 lncRNA downstream 4289 1486041 ~ 1487164 (-) True G1700702
TU1946255 lncRNA downstream 6193 1416668 ~ 1485260 (-) True G1700701
TU1946302 lncRNA downstream 131784 1357564 ~ 1359669 (-) True G1700726
TU1946296 lncRNA downstream 132179 1357564 ~ 1359274 (-) False G1700726
TU1946282 lncRNA downstream 175503 1312956 ~ 1315950 (-) True G1700712
TU1946349 lncRNA upstream 12149 1504505 ~ 1504791 (-) True G1700766
TU1946362 lncRNA upstream 45435 1537791 ~ 1538979 (-) True G1700778
TU1946391 lncRNA upstream 100864 1593220 ~ 1593454 (-) True G1700800
TU1946396 lncRNA upstream 105066 1597422 ~ 1647912 (-) False G1700802
TU1946395 lncRNA upstream 105832 1598188 ~ 1647912 (-) True G1700802
XM_036956566.1 mRNA downstream 14936 1454566 ~ 1476517 (-) False LOC110499704
XM_036956575.1 mRNA upstream 8075 1500431 ~ 1516184 (-) True LOC110511332
XM_036956587.1 mRNA upstream 371618 1863974 ~ 1985304 (-) True ptprbl
XR_005038453.1 mRNA upstream 493554 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 499121 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 499121 1991477 ~ 2085804 (-) False LOC110499711
TU1946284 other downstream 45577 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 168090 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1136944 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 630173 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 696077 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 1080318 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1291586 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1736646 3229002 ~ 3230041 (-) True G1702117

Expression Profile