RNA id: TU1945132


Basic Information

Item Value
RNA id TU1945132
length 1117
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1699819
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1571631 ~ 1572818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctttcagtctgacagtaacagtcctgtagatcatatatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagattatatatcagtctgacggtaacagtcctgtagattatatatcagtctgacagtaacagtcctgtagatcgtatatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagattatatcctatcagtctgatggtaacagtcctgtagatcatatcctatcagtctgatggtaacagtcctgtagatcatatatcagtctgacagtaacagtcctgtagatcatatatcagtctgacagtaacagtcctgtagattatatatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagatcatatatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagattatatcctatcagtctgacagtaacagtcctgtagatcgtatatcagtctgacagtaacagtcctgtagatcgtatatcagtctgacagtaacagtcctgtagatcgtatatcagtctgacagtaacagtcctgtagatcatatatcagtctgacagtaacagtcctgtagattatatcctatcagtctgacagtaacagtcctgtagattatatcctatcagtctgacagtaacagtcctgtagattatatcctatcagtctgacagtaacagtcctgtagattatatcctatcagtctgacagtaacagtcctgtagatcatatatcagtctgacagtaacagtcctgtagatcgtatatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagatcgtatatcagtctgatggtaacagtcctgtagatcgtatatcagtctgacagtaacagtcctgtagatcatatcctatcagtctgacagtaacagtcctgtagatcgtatatcagtctgatggtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945125 lncRNA upstream 9439 1560132 ~ 1562192 (+) True G1699812
TU1945110 lncRNA upstream 37413 1532639 ~ 1534218 (+) True G1699800
TU1945065 lncRNA upstream 71259 1442194 ~ 1500372 (+) True G1699768
TU1945085 lncRNA upstream 97668 1473236 ~ 1473963 (+) True G1699777
TU1945078 lncRNA upstream 120270 1450479 ~ 1451361 (+) True G1699773
TU1945142 lncRNA downstream 19572 1592390 ~ 1592616 (+) True G1699826
TU1945143 lncRNA downstream 20311 1593129 ~ 1593328 (+) True G1699827
TU1945162 lncRNA downstream 55539 1628357 ~ 1628781 (+) False G1699837
TU1945163 lncRNA downstream 55539 1628357 ~ 1628781 (+) True G1699837
TU1945180 lncRNA downstream 101084 1673902 ~ 1679900 (+) True G1699852
XM_036956574.1 mRNA upstream 71575 1489693 ~ 1500056 (+) True LOC110499710
XM_036956571.1 mRNA upstream 84466 1476880 ~ 1487165 (+) True LOC110499702
XR_005038760.1 mRNA upstream 87463 1484027 ~ 1484168 (+) True LOC118943024
XM_036956553.1 mRNA upstream 265728 1176701 ~ 1305903 (+) False LOC110518351
XM_036956580.1 mRNA downstream 34596 1607414 ~ 1669220 (+) False LOC110500915
XM_036956581.1 mRNA downstream 34596 1607414 ~ 1669220 (+) False LOC110500915
XM_036956582.1 mRNA downstream 34596 1607414 ~ 1669220 (+) False LOC110500915
XM_036958448.1 mRNA downstream 98241 1671059 ~ 1673293 (+) True LOC118942986
XM_036956584.1 mRNA downstream 116124 1688942 ~ 1769654 (+) False LOC110499743
TU1945115 other upstream 32751 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 228493 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 266898 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 471410 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 485605 1082691 ~ 1086026 (+) True G1699629
TU1945155 other downstream 92938 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 185651 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 294876 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 294876 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 294876 1867694 ~ 1869554 (+) True G1699934

Expression Profile