RNA id: TU1946396


Basic Information

Item Value
RNA id TU1946396
length 1336
lncRNA type read_through
GC content 0.43
exon number 3
gene id G1700802
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1597422 ~ 1647912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaaggttaaataaaaaacacaaaataaaataaataatttgccTACCTAAAATAAGTCATTTTCCTAGGTCCCTCAAATGAAACAAAATGAAGCTGGTGTTGTATTTAAACAAAGGCAatctcaataaaaaaaaataatgaaacaacgtttgggaacccctgctgtGCATACTGCACCACTACAGTAgttaactatatagggaatagggtgccatttgtgactcaGCCTTGTAGTGTGGACAGATGAGCTCATTCAGCGTTTCTTACATGTAATAACGGAGTCAAGTTACATACAGCAGCGTGGTCGTCACCATAGTTACGGTCCTCTGGTTTTAAATACGGACtggagatggatggatagaatAACCACAGATGGCTGGATGGACGGAGCGCCTCGATTTACACTTgtcttgtgtcccaaatggcaccctattccatatttagtgcaccacttttgaccagggctcataggggcCACAAGTCGTGCACTACagtgaacagggtgccattttgggtttaGGGCACTTCCTCTCTGTTCCAATATGCATTCTAGCAGACCAATCAGAATGACAAGCAATGGTCATgttccagacagactgactgaactACCAATCCCCTTCCTGATGAACTATTCACTGTTATTGGTAGATCAGTCAGTCTGAACTACCAATCCCCTTCCTGAATAACTACTCACTGTTATTGGTAGATCAGTCAGTCTGAACTACCAATCCCCTTCCTGAATAACTACTCACTGTTATTGGTAGATCAGTCAGTCTGAACTACCAATCCCCTTCCTGAATAACTACTCACTGTTATTGGTAGATCAGTCAGTCTGAACTACCAATCCCCTTCCTGATTAACTACTCACTGTTATtggtagatcagtcagtcaactACCAATCCCCTTACATCCTGAATAACTACTCACTGTTATTGGTAGACCAGTCAGGATGTAAGGGGCATGCATTTTAAGTCATATACTTGTAGGTATTGAAGACAGAGGATGGGAGGACTCTCCTGAAATGACACGTGATTGGATGAGAGATTGGAAGGGGTAGCGATGAGGAGCGTTGGGGGCGGTCCTTCTTCCTTCTGAGAGCCAGGAGGGTAGGATGATTGGAGAGCTATTCTGTCCGTCACGGGAGTGCATCTGATGATAGGTTGAGATTCAGACACGCATCCCTCTGTTCTGTATCGTGATTGGTTGGTCACAGTTCCTCCTTGTAGTAGCCCAGCTTAGCAAAACTCATCTCTTTCCTCAACTGCATCACTTCCCAGAACATCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946391 lncRNA downstream 3968 1593220 ~ 1593454 (-) True G1700800
TU1946362 lncRNA downstream 58443 1537791 ~ 1538979 (-) True G1700778
TU1946286 lncRNA downstream 84354 1454720 ~ 1513068 (-) True LOC110499704
TU1946424 lncRNA upstream 17745 1665657 ~ 1668599 (-) True G1700827
TU1946428 lncRNA upstream 33675 1681587 ~ 1682378 (-) True G1700829
TU1946430 lncRNA upstream 41087 1688999 ~ 1717124 (-) True G1700830
TU1946449 lncRNA upstream 70854 1718766 ~ 1729289 (-) True G1700844
TU1946456 lncRNA upstream 79285 1727197 ~ 1727605 (-) True G1700850
XM_036956575.1 mRNA downstream 81238 1500431 ~ 1516184 (-) True LOC110511332
XM_036956567.1 mRNA downstream 120905 1454566 ~ 1476517 (-) False LOC110499704
XM_036956587.1 mRNA upstream 216062 1863974 ~ 1985304 (-) True ptprbl
XR_005038453.1 mRNA upstream 337998 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 343565 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 343565 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA upstream 343565 1991477 ~ 2085804 (-) True LOC110499711
TU1946284 other downstream 151546 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 274059 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1242913 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 474617 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 540521 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 924762 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1136030 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1581090 3229002 ~ 3230041 (-) True G1702117

Expression Profile