RNA id: TU1945162


Basic Information

Item Value
RNA id TU1945162
length 349
lncRNA type intronic
GC content 0.37
exon number 3
gene id G1699837
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1628357 ~ 1628781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACTACAGTTAGATGAGTTAATAGGTCATGTTGTGAGTTACTACAGTTAGATGAGTTAATAGGTCATGTTGTGAGTTACTACAGTTAGATGAGTTAATAGGTCATGTTGTGAGGTACTACAGTCAGATGAGTTAATAGGTCATGTTGTGAGTTACTACAGTTAGATGAGTTAATAGGTCATGTTGTGAGTTACTACAGTTAGATGAGTTAATAGGTCATGTTGTGAGGCGGTTTCAATTGAGAAATAGATAGTCGTTTGGCTAGATCGGTCCACTGTCAAGTTGTTTATTAGTCGTATACCACACATATCCCGTACATGCatcgtccaatgaaatgcttacttgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945143 lncRNA upstream 35029 1593129 ~ 1593328 (+) True G1699827
TU1945142 lncRNA upstream 35741 1592390 ~ 1592616 (+) True G1699826
TU1945132 lncRNA upstream 55539 1571631 ~ 1572818 (+) True G1699819
TU1945125 lncRNA upstream 66165 1560132 ~ 1562192 (+) True G1699812
TU1945110 lncRNA upstream 94139 1532639 ~ 1534218 (+) True G1699800
TU1945180 lncRNA downstream 45121 1673902 ~ 1679900 (+) True G1699852
TU1945184 lncRNA downstream 52901 1681682 ~ 1682227 (+) True G1699856
TU1945192 lncRNA downstream 83925 1712706 ~ 1714944 (+) True G1699863
TU1945203 lncRNA downstream 110270 1739051 ~ 1739763 (+) True G1699872
TU1945208 lncRNA downstream 131656 1760437 ~ 1762078 (+) True G1699877
XM_036956577.1 mRNA upstream 28275 1517362 ~ 1600082 (+) False LOC110517600
XM_036956576.1 mRNA upstream 28275 1517469 ~ 1600082 (+) False LOC110517600
XM_036956578.1 mRNA upstream 28275 1517469 ~ 1600082 (+) False LOC110517600
XM_036956579.1 mRNA upstream 28275 1517469 ~ 1600082 (+) True LOC110517600
XM_036956574.1 mRNA upstream 128301 1489693 ~ 1500056 (+) True LOC110499710
XM_036958448.1 mRNA downstream 42278 1671059 ~ 1673293 (+) True LOC118942986
XM_036956584.1 mRNA downstream 60161 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA downstream 60163 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA downstream 60608 1689389 ~ 1769654 (+) False LOC110499743
XM_036956586.1 mRNA downstream 153102 1781883 ~ 1855471 (+) False LOC110536528
TU1945115 other upstream 89477 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 285219 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 323624 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 528136 1094149 ~ 1100221 (+) True G1699655
TU1944882 other upstream 542331 1082691 ~ 1086026 (+) True G1699629
TU1945155 other downstream 36975 1665756 ~ 1669220 (+) True LOC110500915
TU1945169 other downstream 129688 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 238913 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 238913 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 238913 1867694 ~ 1869554 (+) True G1699934

Expression Profile