RNA id: TU1945184


Basic Information

Item Value
RNA id TU1945184
length 387
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G1699856
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1681682 ~ 1682227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGGGGATAACGCTATAGAGGCTGTGCTGACTTTGAGGGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGAGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGAGGATAACGCTATAGAGGCTGTACTGACTGTGAGAGGAGATAACGCTATAGAGGCTGTACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945180 lncRNA upstream 1782 1673902 ~ 1679900 (+) True G1699852
TU1945162 lncRNA upstream 52901 1628357 ~ 1628781 (+) False G1699837
TU1945163 lncRNA upstream 52901 1628357 ~ 1628781 (+) True G1699837
TU1945143 lncRNA upstream 88354 1593129 ~ 1593328 (+) True G1699827
TU1945142 lncRNA upstream 89066 1592390 ~ 1592616 (+) True G1699826
TU1945192 lncRNA downstream 30479 1712706 ~ 1714944 (+) True G1699863
TU1945203 lncRNA downstream 56824 1739051 ~ 1739763 (+) True G1699872
TU1945208 lncRNA downstream 78210 1760437 ~ 1762078 (+) True G1699877
TU1945214 lncRNA downstream 81736 1763963 ~ 1764456 (+) True G1699880
TU1945172 lncRNA downstream 87165 1769392 ~ 1769720 (+) True LOC110499743
XM_036958448.1 mRNA upstream 8389 1671059 ~ 1673293 (+) True LOC118942986
XM_036956580.1 mRNA upstream 12462 1607414 ~ 1669220 (+) False LOC110500915
XM_036956581.1 mRNA upstream 12462 1607414 ~ 1669220 (+) False LOC110500915
XM_036956582.1 mRNA upstream 12462 1607414 ~ 1669220 (+) False LOC110500915
XM_036956579.1 mRNA upstream 81600 1517469 ~ 1600082 (+) True LOC110517600
XM_036956584.1 mRNA downstream 6715 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA downstream 6717 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA downstream 7162 1689389 ~ 1769654 (+) False LOC110499743
XM_036956586.1 mRNA downstream 99656 1781883 ~ 1855471 (+) False LOC110536528
XM_036956591.1 mRNA downstream 411539 2093766 ~ 2102425 (+) True LOC110499712
TU1945155 other upstream 12462 1665756 ~ 1669220 (+) True LOC110500915
TU1945115 other upstream 142802 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 338544 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 376949 1302886 ~ 1304733 (+) True LOC110518351
TU1944912 other upstream 581461 1094149 ~ 1100221 (+) True G1699655
TU1945169 other downstream 76242 1758469 ~ 1769277 (+) False LOC110499743
TU1945284 other downstream 185467 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 185467 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 185467 1867694 ~ 1869554 (+) True G1699934
TU1946903 other downstream 957113 2639340 ~ 2653619 (+) False LOC110519348

Expression Profile