RNA id: TU1946472


Basic Information

Item Value
RNA id TU1946472
length 399
lncRNA type intronic
GC content 0.47
exon number 3
gene id G1700859
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1753050 ~ 1753589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgatgtgatgagcagcagcagctgtctgtctaatgtgatgtgaggagtagcagctgtctgtctaatgtgatgtgatgagtagcagcagctgtctgtctaatgtgatgtgaggagtagcagctgtctgtctaatgtgatgtgatgagcagcagcagctgtctgtctaatgtgatgtgaggagtagcttctgtctgtctaatgtgatgtgatgagcagcagcagctgtctgtctaatgtgatgtgatgagtagcagcagctgtctgtctaatgtgatgtgaggagtagcagcagctgtctgtctaatgtgatgtgaggagtagcttctgtctgtctaatgtgatgtgatgagcagcagcagctgtctgtctaatgtgatgtgatgagcagcagcagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946469 lncRNA downstream 5477 1747008 ~ 1747573 (-) True G1700857
TU1946459 lncRNA downstream 12052 1740284 ~ 1740998 (-) True G1700852
TU1946417 lncRNA downstream 19434 1732431 ~ 1733616 (-) True G1700820
TU1946449 lncRNA downstream 23761 1718766 ~ 1729289 (-) True G1700844
TU1946456 lncRNA downstream 25445 1727197 ~ 1727605 (-) True G1700850
TU1946474 lncRNA upstream 2898 1756487 ~ 1756785 (-) True G1700861
TU1946477 lncRNA upstream 15804 1769393 ~ 1769835 (-) True G1700864
TU1946505 lncRNA upstream 75901 1829490 ~ 1830151 (-) True G1700889
TU1946507 lncRNA upstream 76612 1830201 ~ 1834165 (-) True G1700890
TU1946524 lncRNA upstream 98414 1852003 ~ 1855281 (-) False G1700901
XM_036956575.1 mRNA downstream 236866 1500431 ~ 1516184 (-) True LOC110511332
XM_036956567.1 mRNA downstream 276533 1454566 ~ 1476517 (-) False LOC110499704
XM_036956587.1 mRNA upstream 110385 1863974 ~ 1985304 (-) True ptprbl
XR_005038453.1 mRNA upstream 232321 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 237888 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 237888 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA upstream 237888 1991477 ~ 2085804 (-) True LOC110499711
TU1946284 other downstream 307174 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 429687 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1398541 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 368940 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 434844 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 819085 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 1030353 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1475413 3229002 ~ 3230041 (-) True G1702117

Expression Profile