RNA id: TU1946505


Basic Information

Item Value
RNA id TU1946505
length 314
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1700889
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1829490 ~ 1830151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctctctgtctgtctctctctctctctctgtctctctctgtctgtctctctctgtctgtctctctctgtctctctctctctctctctctctgtctctctctgtctgtctctctctgtctgtctctctctgtctgtctctctctctctgtctgtctctctctgtctctctctctgtctgtctctctctgtctctctctctctgtctgtctctctctgtctgtctctctctgtctgtctctctctgtcagtctctctctgtctctctctctgtctgtctctctctgtctctctctgtctgtctctctctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946477 lncRNA downstream 59655 1769393 ~ 1769835 (-) True G1700864
TU1946474 lncRNA downstream 72705 1756487 ~ 1756785 (-) True G1700861
TU1946472 lncRNA downstream 75901 1753050 ~ 1753589 (-) True G1700859
TU1946469 lncRNA downstream 81917 1747008 ~ 1747573 (-) True G1700857
TU1946459 lncRNA downstream 88492 1740284 ~ 1740998 (-) True G1700852
TU1946507 lncRNA upstream 50 1830201 ~ 1834165 (-) True G1700890
TU1946524 lncRNA upstream 21852 1852003 ~ 1855281 (-) False G1700901
TU1946525 lncRNA upstream 21852 1852003 ~ 1855281 (-) True G1700901
TU1946557 lncRNA upstream 85368 1915519 ~ 1916593 (-) True G1700929
TU1946559 lncRNA upstream 89365 1919516 ~ 1920401 (-) True G1700931
XM_036956575.1 mRNA downstream 313306 1500431 ~ 1516184 (-) True LOC110511332
XM_036956567.1 mRNA downstream 352973 1454566 ~ 1476517 (-) False LOC110499704
XM_036956587.1 mRNA upstream 33823 1863974 ~ 1985304 (-) True ptprbl
XR_005038453.1 mRNA upstream 155759 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 161326 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 161326 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA upstream 161326 1991477 ~ 2085804 (-) True LOC110499711
TU1946284 other downstream 383614 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 506127 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1474981 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 292378 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 358282 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 742523 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 953791 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1398851 3229002 ~ 3230041 (-) True G1702117

Expression Profile