RNA id: TU1945264


Basic Information

Item Value
RNA id TU1945264
length 237
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1699922
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1845502 ~ 1846128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttctagacagtgtctgtatctctcacgATCCTCACCTGTAGTGTCTtctagacagtgtctgtatctctcacggttctcacctgtaGTGTCTtctagacagtgtctgtatctctcacggtcctcacctgtagtctcttctagacagtgtctgtatctctcacgATCCTCATGTGTCTtctagacagtgtctgtatctctcacggtcctcacctgtagtctcttctagacagtgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945254 lncRNA upstream 29085 1816035 ~ 1816417 (+) True G1699912
TU1945249 lncRNA upstream 37309 1807875 ~ 1808193 (+) True G1699907
TU1945241 lncRNA upstream 42608 1801798 ~ 1802894 (+) True G1699901
TU1945237 lncRNA upstream 47721 1797339 ~ 1797781 (+) True G1699897
TU1945223 lncRNA upstream 68930 1775798 ~ 1776572 (+) True G1699885
TU1945220 lncRNA downstream 7639 1853767 ~ 1855306 (+) True LOC110536528
TU1945283 lncRNA downstream 17892 1864020 ~ 1867071 (+) False G1699933
TU1945281 lncRNA downstream 18012 1864140 ~ 1867071 (+) False G1699933
TU1945282 lncRNA downstream 18012 1864140 ~ 1867071 (+) True G1699933
TU1945289 lncRNA downstream 27927 1874055 ~ 1874660 (+) True G1699937
XM_036956584.1 mRNA upstream 75848 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA upstream 75848 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA upstream 75848 1689389 ~ 1769654 (+) False LOC110499743
XM_036958448.1 mRNA upstream 172209 1671059 ~ 1673293 (+) True LOC118942986
XM_036956582.1 mRNA upstream 176282 1607414 ~ 1669220 (+) False LOC110500915
XM_036956591.1 mRNA downstream 247638 2093766 ~ 2102425 (+) True LOC110499712
XM_036956607.1 mRNA downstream 412588 2258716 ~ 2443078 (+) False LOC118942829
XR_005038454.1 mRNA downstream 599478 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 662899 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 665065 2511193 ~ 2514344 (+) True LOC110499733
TU1945169 other upstream 76225 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 176282 1665756 ~ 1669220 (+) True LOC110500915
TU1945115 other upstream 306622 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 502364 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 540769 1302886 ~ 1304733 (+) True LOC110518351
TU1945284 other downstream 21566 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 21566 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 21566 1867694 ~ 1869554 (+) True G1699934
TU1946903 other downstream 793212 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 998576 2844704 ~ 2849603 (+) False G1701265

Expression Profile