RNA id: TU1945282


Basic Information

Item Value
RNA id TU1945282
length 2865
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1699933
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1864020 ~ 1867071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAAAACCAGGCACATTTACAACATGACATTGTTTACATTCGTTCACATTGATCCAGTGCAAACACAATACGACAGAGAAGCACAGCCCCTTCCCTGTAGGTATAGGTCACGTGACAGTTGTTGGGTTGTGACACCTCTGGTATTCACAATATGTTAACGCAATATCAAATATACAATCTATACCAGTATagtcagacagactagtgtcctgtccagggggtgtactagtacagtaatatataccagtatagtcagacagactagtgtcctgtccaggggtagTACTAGTACagtaatatataccagtatagtcagacagactagtgtcctgtccaggggtagTACTAGTACATTAATATATACCagtagtgtcctgtccagggggagTACTAGTACAGTAATCTATACCAGTATagtcagacagactagtgtcctgtccagggggtgtactagTACATTAAGTTGCCTCACTCttcagaaacaggagacaggctCCTGTCCTTTGGTTCGCTCTGGCTTGGACAAGGGGGTGTACTAGTACATTAAGTTGCCTCACTCttcagaaacaggagacaggctCCTGTCCTTTGGTTCGCTCTGGCTTGGACAAGGGGGTGTACTAGTACATTAAGTTGCCTCACTCttcagaaacaggagacaggctCCTGCCCTTTGGTTCGCTCTGGCTTGGACAAGGCTTTCTTATTTTGCCAGTATGCTCACAGAGTAAGACACTGCTCTAGAGAGATACTACTCCTATGATCACTCTATGGTTGTGtgctccaaatggcaccctattccctacatattacactacttttaaccacagccctatgggctctggtcaatagtagtgcactatatagggaatagggtgccttacCTTTTGGGACGCCTGCCTACATCGGTGATTAATTAATACAACCTTAGTTCTCCAGAGGGATGAACGGTTCATTGTTAACTATGTGCTGAACGTAATGAGTTGGCAGATTACCTCATCGTATTAACAAGAGACCGGAAACAGAGTTGGAAACCAATTAGGAACATGCATCAACACCTTTCTCCTCCATTTCCAGCAGTGTGATTATGAAGaaacaaacaaatgaaaataaaataagcaACATCATTCTCTACTTTTAAATGAAAGGGAACATTCTAGGCTAGGGAATACAATAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTAGGCTAGGGAACATTCCAGGCTAGGGAACATTCCAGGCTAGGGAAGATTCCAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTGGGCTAGGGAACATTCTAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTGGGCTAGGGAACATTCTAGGCTAGGGAACATTCTAGGCTAGGGAACATTCCAGGCTAGGGAACATTCCAGGCTAGGGAAGATTCCAGGCTAGGGAACATTCTAGGCTAGGGAACATTCTGGACTAGGGAACATTCTTTCAGTTAGTTTTAAGTTATGTTCATATTCCAGTGTGGAATTATACCAACTGTAAAAGACACATACTGTAaatggtacatactgtacatgataCCAACTGCAAATGATACATACTGTAAATGATACCTACTGTAAATGGTACATACTGTAAATGATACATACTGTAAATGGTACATACTGTAAATGATACATACTGTAAATGGTACATACTGTAAATGATACATACTGTAAATGGTACATACTGTAAATGATACATACGGCAGGCTTACACCATGACTTCTCTGATTTGCCTCCAACAcctctgcccctcctctcctAGTCTCTTTCTAAAGGCCTGGGTTAGAAGGTTTCCCCTGCAGGTCAACTGTTGGTTGGTGAGCGAGGTAGTAGAGATGTTACAGGGAAACAGAAACGCTGGGAGAATATTCATCAGGTAGCTAAGCGCCGTCACATGAAGTTTTAGCTGCTGTATGGGCACCAGCCATACTCTGGTGAAACCCAGAGAGATGTGTTCCAGAGGGTCATTGGGGATCTAACAACGTGTTAGTTTGACAGGAGGGAAGGGGATTGATATAGATTTCTGTAATGAAAAACTTTTGAGGAATCTACAGTGGAGCTTAATGCCACACTATTAGATCCACTCAACTCCCagcagggaggagaacagatggaGAGAGTTGATGTTTCTGTACTCTATTATCTGGAGACAATCTCTTTATGATATGACCTTTAGGCTTATAGGGGAGGACAGGGGTGAGAGGGTCAAGCCTGAGAGACTGGTGCGCTACTCTACATAATACTGTATACATTGCCTTACTTGCTGTGTGGGGTCAATAGGTGCAAAAGCAATGACGAGCAccagcatttttttgtgaagagagGAATAGGACTAAACAGGAAATTCAATATTCCTGCTGCTGGGAGGAGTTAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTATTCCATCTGATACTACTGGGAGGAGTCAAAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACCACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTGATACTACTGGGAGGAGTCAGAATGTGTTCCATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945220 lncRNA upstream 8834 1853767 ~ 1855306 (+) True LOC110536528
TU1945264 lncRNA upstream 18012 1845502 ~ 1846128 (+) True G1699922
TU1945254 lncRNA upstream 47723 1816035 ~ 1816417 (+) True G1699912
TU1945249 lncRNA upstream 55947 1807875 ~ 1808193 (+) True G1699907
TU1945241 lncRNA upstream 61246 1801798 ~ 1802894 (+) True G1699901
TU1945289 lncRNA downstream 6984 1874055 ~ 1874660 (+) True G1699937
TU1945302 lncRNA downstream 16849 1883920 ~ 1884323 (+) True G1699944
TU1945308 lncRNA downstream 27994 1895065 ~ 1896006 (+) True G1699948
TU1945327 lncRNA downstream 49991 1917062 ~ 1918379 (+) True G1699963
TU1945366 lncRNA downstream 118839 1985910 ~ 1989639 (+) False G1699992
XM_036956586.1 mRNA upstream 8669 1781883 ~ 1855471 (+) False LOC110536528
XM_036956584.1 mRNA upstream 94486 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA upstream 94486 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA upstream 94486 1689389 ~ 1769654 (+) False LOC110499743
XM_036958448.1 mRNA upstream 190847 1671059 ~ 1673293 (+) True LOC118942986
XM_036956591.1 mRNA downstream 226695 2093766 ~ 2102425 (+) True LOC110499712
XM_036956607.1 mRNA downstream 391645 2258716 ~ 2443078 (+) False LOC118942829
XR_005038454.1 mRNA downstream 578535 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 641956 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 644122 2511193 ~ 2514344 (+) True LOC110499733
TU1945169 other upstream 94863 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 194920 1665756 ~ 1669220 (+) True LOC110500915
TU1945115 other upstream 325260 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 521002 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 559407 1302886 ~ 1304733 (+) True LOC110518351
TU1945284 other downstream 623 1867694 ~ 1869554 (+) False G1699934
TU1945285 other downstream 623 1867694 ~ 1869554 (+) False G1699934
TU1945286 other downstream 623 1867694 ~ 1869554 (+) True G1699934
TU1946903 other downstream 772269 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 977633 2844704 ~ 2849603 (+) False G1701265

Expression Profile