RNA id: TU1945285


Basic Information

Item Value
RNA id TU1945285
length 1707
RNA type TUCP
GC content 0.42
exon number 2
gene id G1699934
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1867694 ~ 1869554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCCAACCAACACTGTTTCTTCTGTAGCTCGGTCTGTTTCCGTGGCTCGGGGCTCAGAGAAGCTCAGACAGAGAAATGCCACGTCCCAAAACCTGCAGTCTGGAAAGGTCAGTGTCTTGGCCACTACAGACCTCTCACAGGGTCAGGATGTTGACATTTTATTCAATTCTCTCACTTTATCCCCAGGATCTCAGCAGGATTTGGCCAGTATTGCTTATTGTGTGAAGTTTcttcagttgtttttttttagTTTAGTCCAACTTCTAGACCTTCTCCTGTTTAGATCAGGAAGCTGGCCAGCCCAGATTCAGTTGAAGGGATCTCCCGCTCAGTTCAACACACGACATAGAAAGATCACTGTTCGTATTGTTCACAGACACATCCATCAGCCTAGTTTCATGCAAAAGGATGATCAGAAATGCAACATCATGTTTTGAAGAAGGTAATGTACAAAACCCGTACAGTCTCTCTCATGAACACTCCCTCCATCTTGGTTCGAGAGACCACGGAGAAAAGGTTACCACCTCTTTCCGGAAACAACCGAAAACAAGATGGCGTTTGTTTTCCAGTGGAGTTTTCCCTTTGCCCTAGAAAACATAGGTAGCTGAGATGGCATACAAACTATATGCTGTTCCCTCCTCCAGGCTCTACTGTACAATCtcaatggtacacacacacacacacacacacacacaacatgaacTGACGCCATGTTTAAAGATAAGAGGACTATTCACAACACAACCAACTGTACAGACGGTCTGCTACTTTATACAAGGATCTAGACAGCATTGTGATGAGCTACTCTCAAGAcagctagctgtctgtctgtctgctccggGTTCATTCTTTTTTTCAACTACAAACCAGCAACTACGATTTAGAACATATTATACAGAAAGGTCTTTgtacccaaatggcaccctattccctatatagtgcacaacttttgattagggcccatagagaatagggtgccatttgggatgcagggaaGGTTTCTTCAGGGAAGGTTTTCAGGCATTCAGGCCTTGTCATAATAATGCTGTGTGATGTAGGGAAGGTTTTCAGGCATTCAGGCCTTGTCATAATAATGCTGTGTGATATAGGGAAGGTTTTCAGGCATTCAGGCCTTGTCATAATAATGCTGTGTGATGCAGGGAAGGTTTTCAGGCATTCAGGCCTTGTCATAATAATGCTGTGTGATGCAGGGAAGCTACGCCTCATAGAATCCCATTCATTGCTTCGCCTGATAGCTTTCATTCATCTTTTTTTCTGTTATGTTGAATAAGAATCATTATATCTACATTTTATATCAGTTCCTTTTGTCTTTTTCATCAGACATTATTAATATTGAAATAACATGAGTTTAGGGAATAATGTTTCTTTGAAGAGCTTTACAATTAGGTGCAAAACAATATAATCATATCTCATTGAATGCAACCTAAGATTCAGCTATTAGTGGACGAAACGCCAATGTTTCCAGACGTCAATCTGCTCCATTTTAAATAGACATCCTGAGAGGTTGAACCAACAGTGTATCAAAAATAAATagctatacccccccccccacacactctatAGTGCTTTAGTTGTGACAGAATGGCTGTCTGGTGGTATTGAACAGATTCTTCCCTGGTTTTCCTTCTCACTCAGCTGTGTGGAGAGGAACCCAGACTGTCGTTAGTTAGCGTCCCGTGTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945283 lncRNA upstream 623 1864020 ~ 1867071 (+) False G1699933
TU1945281 lncRNA upstream 623 1864140 ~ 1867071 (+) False G1699933
TU1945282 lncRNA upstream 623 1864140 ~ 1867071 (+) True G1699933
TU1945220 lncRNA upstream 12388 1853767 ~ 1855306 (+) True LOC110536528
TU1945264 lncRNA upstream 21566 1845502 ~ 1846128 (+) True G1699922
TU1945289 lncRNA downstream 4501 1874055 ~ 1874660 (+) True G1699937
TU1945302 lncRNA downstream 14366 1883920 ~ 1884323 (+) True G1699944
TU1945308 lncRNA downstream 25511 1895065 ~ 1896006 (+) True G1699948
TU1945327 lncRNA downstream 47508 1917062 ~ 1918379 (+) True G1699963
TU1945366 lncRNA downstream 116356 1985910 ~ 1989639 (+) False G1699992
XM_036956586.1 mRNA upstream 12223 1781883 ~ 1855471 (+) False LOC110536528
XM_036956584.1 mRNA upstream 98040 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA upstream 98040 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA upstream 98040 1689389 ~ 1769654 (+) False LOC110499743
XM_036958448.1 mRNA upstream 194401 1671059 ~ 1673293 (+) True LOC118942986
XM_036956591.1 mRNA downstream 224212 2093766 ~ 2102425 (+) True LOC110499712
XM_036956607.1 mRNA downstream 389162 2258716 ~ 2443078 (+) False LOC118942829
XR_005038454.1 mRNA downstream 576052 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 639473 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 641639 2511193 ~ 2514344 (+) True LOC110499733
TU1945169 other upstream 98417 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 198474 1665756 ~ 1669220 (+) True LOC110500915
TU1945115 other upstream 328814 1537956 ~ 1538880 (+) True G1699804
TU1944994 other upstream 524556 1342499 ~ 1343138 (+) True G1699724
TU1944767 other upstream 562961 1302886 ~ 1304733 (+) True LOC110518351
TU1946903 other downstream 769786 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 975150 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1904485 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 2063233 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 2063233 3932787 ~ 3936037 (+) False G1701654

Expression Profile