RNA id: TU1946559


Basic Information

Item Value
RNA id TU1946559
length 312
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1700931
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1919516 ~ 1920401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggtagcctagtggttagagccaggtagcctagtggttagaggcaggtagcctagtggttagagcattggactagtaacgggaaggttgcaagatcaaatccctgagctgacaaggtcgttctgcccctgaacacaaGCAGTTGACCCACtgggccgttattgaaaataagaatttgttcttaactgacttgcctggtaaaatagacaaacactggcagtagaatagccCAGTAGAATAGCCCAGTAGAATAGCCCAGTAGAATAGCCCGTACGGAATAGCCCAGTAGAATAGCCCAGTCGAATAGCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946557 lncRNA downstream 2923 1915519 ~ 1916593 (-) True G1700929
TU1946524 lncRNA downstream 64235 1852003 ~ 1855281 (-) False G1700901
TU1946525 lncRNA downstream 64235 1852003 ~ 1855281 (-) True G1700901
TU1946507 lncRNA downstream 85351 1830201 ~ 1834165 (-) True G1700890
TU1946505 lncRNA downstream 89365 1829490 ~ 1830151 (-) True G1700889
TU1946576 lncRNA upstream 41248 1961649 ~ 1962396 (-) True G1700943
TU1946578 lncRNA upstream 53887 1974288 ~ 1975136 (-) True G1700945
TU1946586 lncRNA upstream 65509 1985910 ~ 1988901 (-) False LOC118942826
TU1946587 lncRNA upstream 65509 1985910 ~ 1987383 (-) False LOC118942826
TU1946588 lncRNA upstream 65509 1985910 ~ 1987383 (-) False LOC118942826
XM_036956575.1 mRNA downstream 403332 1500431 ~ 1516184 (-) True LOC110511332
XM_036956567.1 mRNA downstream 442999 1454566 ~ 1476517 (-) False LOC110499704
XR_005038453.1 mRNA upstream 65509 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 71076 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 71076 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA upstream 71076 1991477 ~ 2085804 (-) True LOC110499711
XM_036956597.1 mRNA upstream 192641 2113042 ~ 2124303 (-) False LOC110512520
TU1946284 other downstream 473640 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 596153 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1565007 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 202128 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 268032 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 652273 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 863541 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1308601 3229002 ~ 3230041 (-) True G1702117

Expression Profile