RNA id: TU1946578


Basic Information

Item Value
RNA id TU1946578
length 273
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1700945
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1974288 ~ 1975136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgttctgtcctggcaCAACACCTCTGACTGATGAAACACGGTGTAACAGTAATGTCATCAGTCTCTGTGTAGTTTAATTTACCACCACACCTCTGATGAGACATAGTGTAACAGTCCCAGTTATTCCTCTCAGAGAGTAAAGACCTGCAGCTCTGTCTACTTTCTGTGAAgatctgcctgctgccattcctctCCTAATGAAACATTGTGTAACAGCGTTGTTCATCAGTCATTCCCCTGATCAGTCATTCCCCTGACCTGTCATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946576 lncRNA downstream 11892 1961649 ~ 1962396 (-) True G1700943
TU1946559 lncRNA downstream 53887 1919516 ~ 1920401 (-) True G1700931
TU1946557 lncRNA downstream 57695 1915519 ~ 1916593 (-) True G1700929
TU1946524 lncRNA downstream 119007 1852003 ~ 1855281 (-) False G1700901
TU1946525 lncRNA downstream 119007 1852003 ~ 1855281 (-) True G1700901
TU1946586 lncRNA upstream 10774 1985910 ~ 1988901 (-) False LOC118942826
TU1946587 lncRNA upstream 10774 1985910 ~ 1987383 (-) False LOC118942826
TU1946588 lncRNA upstream 10774 1985910 ~ 1987383 (-) False LOC118942826
TU1946594 lncRNA upstream 10774 1985910 ~ 1987383 (-) False LOC118942826
TU1946596 lncRNA upstream 10774 1985910 ~ 1988901 (-) False LOC118942826
XM_036956575.1 mRNA downstream 458104 1500431 ~ 1516184 (-) True LOC110511332
XM_036956567.1 mRNA downstream 497771 1454566 ~ 1476517 (-) False LOC110499704
XR_005038453.1 mRNA upstream 10774 1985910 ~ 1990032 (-) False LOC118942826
XM_036956590.1 mRNA upstream 16341 1991477 ~ 2023971 (-) False LOC110499711
XM_036956588.1 mRNA upstream 16341 1991477 ~ 2085804 (-) False LOC110499711
XM_036956589.1 mRNA upstream 16341 1991477 ~ 2085804 (-) True LOC110499711
XM_036956597.1 mRNA upstream 137906 2113042 ~ 2124303 (-) False LOC110512520
TU1946284 other downstream 528412 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 650925 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1619779 352487 ~ 354509 (-) True G1700312
TU1946685 other upstream 147393 2122529 ~ 2123887 (-) True LOC110512520
TU1946724 other upstream 213297 2188433 ~ 2189666 (-) True G1701041
TU1947726 other upstream 597538 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 808806 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 1253866 3229002 ~ 3230041 (-) True G1702117

Expression Profile