RNA id: TU1945397


Basic Information

Item Value
RNA id TU1945397
length 262
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G1700008
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2024358 ~ 2035346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctgtccctctctctctctctctgtctctctctgtccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctgtctctctctgtccctctctctctctctgtccctctctctctctctgtctctctgtctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945376 lncRNA upstream 27170 1992099 ~ 1997188 (+) True G1699993
TU1945366 lncRNA upstream 34719 1985910 ~ 1989639 (+) False G1699992
TU1945368 lncRNA upstream 34719 1985910 ~ 1989639 (+) True G1699992
TU1945327 lncRNA upstream 105979 1917062 ~ 1918379 (+) True G1699963
TU1945308 lncRNA upstream 128352 1895065 ~ 1896006 (+) True G1699948
TU1945412 lncRNA downstream 8205 2043551 ~ 2044218 (+) True G1700019
TU1945475 lncRNA downstream 108638 2143984 ~ 2148189 (+) True G1700072
TU1945490 lncRNA downstream 154824 2190170 ~ 2190861 (+) True G1700083
TU1945493 lncRNA downstream 160023 2195369 ~ 2199781 (+) True G1700084
TU1945495 lncRNA downstream 161359 2196705 ~ 2198399 (+) True G1700085
XM_036956586.1 mRNA upstream 168887 1781883 ~ 1855471 (+) False LOC110536528
XM_036956584.1 mRNA upstream 254704 1688942 ~ 1769654 (+) False LOC110499743
XM_036956583.1 mRNA upstream 254704 1688944 ~ 1769654 (+) False LOC110499743
XM_036956585.1 mRNA upstream 254704 1689389 ~ 1769654 (+) False LOC110499743
XM_036958448.1 mRNA upstream 351065 1671059 ~ 1673293 (+) True LOC118942986
XM_036956591.1 mRNA downstream 58420 2093766 ~ 2102425 (+) True LOC110499712
XM_036956607.1 mRNA downstream 223370 2258716 ~ 2443078 (+) False LOC118942829
XR_005038454.1 mRNA downstream 410260 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 473681 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 475847 2511193 ~ 2514344 (+) True LOC110499733
TU1945284 other upstream 154804 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 154804 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 154804 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 255081 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 355138 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 603994 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 809358 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1738693 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1897441 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1897441 3932787 ~ 3936037 (+) False G1701654

Expression Profile