RNA id: TCONS_00052873


Basic Information

Item Value
RNA id TCONS_00052873
length 643
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id XLOC_025914
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62424335 ~ 62542931 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCAGTGTTCATTGTGCAGAGCCAAACATCAAACAGCGGAGCAGAACACTGACCTTACAGAGGCCGAGACGGCAGCAATGAGGTGTGATGGAGGATCTCTGGCTGAACACAGGTGAGTCTAGAGgtggtgcagtgtgtgtgtgagagctgtGGACACTGACGGACACTGAGGATTGATCAGAGATATCTGGAGGAGCTCACTGGACGTGTGACTGatgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgtgtacTGAAGCTGTATCTCTGACTGATGTACACTGAACACatcttaataaaacacatcaactCTCCATGAGTGAGTTTGTCACATCTGTAATGATGGAAACCCCcagattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagacaGAGATGGATTACATATTGTGTTCAGTCAAATGGTTCTGATTCCCTCAGTGCTGCTTCCTACTGAAGTGTTGTTCAGTGTCAGCAggagcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccactcgGGCTGCTTCTCCTCCTGGAAGCTGAGCGGAGTGTTTCTGCACACTGGGCTGAAGTGCAGATATGTTGGCAGTGGAATGTCC

Function

GO:

id name namespace
GO:0044092 negative regulation of molecular function biological_process
GO:0043086 negative regulation of catalytic activity biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0000315 organellar large ribosomal subunit cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052870 lncRNA upstream 39716 62368724 ~ 62384693 (+) True XLOC_025913
TCONS_00052397 lncRNA upstream 117860 62304042 ~ 62306549 (+) True XLOC_025908
TCONS_00052869 lncRNA upstream 182493 62228510 ~ 62241916 (+) False XLOC_025904
TCONS_00052396 lncRNA upstream 191170 62207834 ~ 62233239 (+) False XLOC_025904
TCONS_00052861 lncRNA upstream 362571 62054694 ~ 62061838 (+) True XLOC_025898
TCONS_00050780 mRNA upstream 63581 62353650 ~ 62360828 (+) False XLOC_025912
TCONS_00050781 mRNA upstream 63602 62356578 ~ 62360807 (+) True XLOC_025912
TCONS_00050779 mRNA upstream 78281 62339264 ~ 62346128 (+) True XLOC_025911
TCONS_00050778 mRNA upstream 94697 62327332 ~ 62329712 (+) True XLOC_025910
TCONS_00050777 mRNA upstream 99610 62317990 ~ 62324799 (+) True XLOC_025909
TCONS_00050717 other upstream 3713654 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 4253995 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 4425850 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 4594490 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 4784961 57636374 ~ 57639448 (+) False XLOC_025808