RNA id: TU1946760


Basic Information

Item Value
RNA id TU1946760
length 493
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1701073
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2284314 ~ 2290998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttaatacattgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagtgttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttctagaatggtcctgtatttggctccatccatcttcccatcaattttagccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946757 lncRNA downstream 4244 2277845 ~ 2280070 (-) False G1701070
TU1946756 lncRNA downstream 4244 2279553 ~ 2280070 (-) True G1701070
TU1946751 lncRNA downstream 16414 2267500 ~ 2267900 (-) True G1701065
TU1946729 lncRNA downstream 68109 2215698 ~ 2216205 (-) True G1701046
TU1946728 lncRNA downstream 72271 2211004 ~ 2212043 (-) True G1701045
TU1946785 lncRNA upstream 46823 2337821 ~ 2338098 (-) True G1701096
TU1946795 lncRNA upstream 92305 2383303 ~ 2387446 (-) True G1701105
TU1946798 lncRNA upstream 105390 2396388 ~ 2397357 (-) True G1701108
TU1946836 lncRNA upstream 152278 2443276 ~ 2443612 (-) True G1701129
TU1946833 lncRNA upstream 153184 2444182 ~ 2446574 (-) False G1701128
XM_036956605.1 mRNA downstream 61114 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 61128 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 125358 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 134603 2143995 ~ 2149711 (-) False LOC118942827
XR_005038457.1 mRNA upstream 738351 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 1297532 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 1297532 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 1297532 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 1297532 3588530 ~ 3998526 (-) False LOC110499739
TU1946724 other downstream 94648 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 160427 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 838438 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 960951 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 1929805 352487 ~ 354509 (-) True G1700312
TU1947726 other upstream 281676 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 492944 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 938004 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 990104 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 1294866 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile