RNA id: TU1945577


Basic Information

Item Value
RNA id TU1945577
length 367
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1700159
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2410755 ~ 2411766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacatggttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatggttagcagatgttattggttacatacacatggttagcagatgttattggtcacatacacatggtcagcagatgttattggtcacatacacatggtcagcagatgttattggtcacatacacatggttagcatatgttattggtcacatacacatggttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatggttagcatatgttattggtcacatacacatggttagcagatgttattggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945573 lncRNA upstream 8876 2400006 ~ 2401879 (+) True G1700158
TU1945572 lncRNA upstream 9116 2400006 ~ 2401639 (+) False G1700158
TU1945569 lncRNA upstream 17106 2389949 ~ 2393649 (+) True G1700155
TU1945561 lncRNA upstream 37267 2372739 ~ 2373488 (+) True G1700147
TU1945525 lncRNA upstream 142775 2267565 ~ 2267980 (+) True G1700111
TU1945523 lncRNA downstream 29819 2441585 ~ 2442568 (+) True LOC118942829
TU1946815 lncRNA downstream 31546 2443312 ~ 2443614 (+) False G1701124
TU1946816 lncRNA downstream 31546 2443312 ~ 2443732 (+) False G1701124
TU1946814 lncRNA downstream 31585 2443351 ~ 2443614 (+) False G1701124
TU1946817 lncRNA downstream 31585 2443351 ~ 2443732 (+) True G1701124
XM_036956591.1 mRNA upstream 308330 2093766 ~ 2102425 (+) True LOC110499712
XM_036956586.1 mRNA upstream 555284 1781883 ~ 1855471 (+) False LOC110536528
XM_036956584.1 mRNA upstream 641101 1688942 ~ 1769654 (+) False LOC110499743
XR_005038454.1 mRNA downstream 33840 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 97261 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 99427 2511193 ~ 2514344 (+) True LOC110499733
trnak-cuu-138 mRNA downstream 109486 2521252 ~ 2521324 (+) True trnak-cuu-138
trnak-cuu-139 mRNA downstream 110038 2521804 ~ 2521876 (+) True trnak-cuu-139
TU1945284 other upstream 541201 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 541201 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 541201 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 641478 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 741535 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 227574 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 432938 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1362273 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1521021 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1521021 3932787 ~ 3936037 (+) False G1701654

Expression Profile