RNA id: TU1946814


Basic Information

Item Value
RNA id TU1946814
length 264
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1701124
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2443312 ~ 2443732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTCCTTGTGTAGAATATGCCAGTTTGTTTTAAGGTAAGGTTTGGTGTGTATTCATATTTGACCCGACTATTTAGTTGTTAAAGTTTTCCCCCTATTTAGTGAGTTGTTGCTTTTAGACTGTTTTATCGATGCACCGGTACCGTTTAGAGTGATGACAACACAGTATATTACATCTTTAGTTGTGTTTACCATTTAACTACGTCAATCACCAGCATGCATGATTCTCCTCCATTACCTAGTGACTAGAGCACATacctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1945523 lncRNA upstream 783 2441585 ~ 2442568 (+) True LOC118942829
TU1945577 lncRNA upstream 31585 2410755 ~ 2411766 (+) True G1700159
TU1945573 lncRNA upstream 41472 2400006 ~ 2401879 (+) True G1700158
TU1945572 lncRNA upstream 41712 2400006 ~ 2401639 (+) False G1700158
TU1945569 lncRNA upstream 49702 2389949 ~ 2393649 (+) True G1700155
TU1946823 lncRNA downstream 2499 2446113 ~ 2447635 (+) False LOC110490688
TU1946824 lncRNA downstream 2499 2446113 ~ 2447579 (+) False LOC110490688
TU1946825 lncRNA downstream 2499 2446113 ~ 2447579 (+) False LOC110490688
TU1946826 lncRNA downstream 2499 2446113 ~ 2447579 (+) True LOC110490688
TU1946843 lncRNA downstream 10467 2454081 ~ 2454402 (+) True G1701136
XM_036956607.1 mRNA upstream 273 2258716 ~ 2443078 (+) False LOC118942829
XM_036956591.1 mRNA upstream 340926 2093766 ~ 2102425 (+) True LOC110499712
XM_036956586.1 mRNA upstream 587880 1781883 ~ 1855471 (+) False LOC110536528
XM_036956583.1 mRNA upstream 673697 1688944 ~ 1769654 (+) False LOC110499743
XR_005038454.1 mRNA downstream 1992 2445606 ~ 2447578 (+) False LOC110490688
XM_036956608.1 mRNA downstream 65413 2509027 ~ 2531457 (+) False LOC110499733
XM_036956609.1 mRNA downstream 67579 2511193 ~ 2514344 (+) True LOC110499733
trnak-cuu-138 mRNA downstream 77638 2521252 ~ 2521324 (+) True trnak-cuu-138
trnak-cuu-139 mRNA downstream 78190 2521804 ~ 2521876 (+) True trnak-cuu-139
TU1945284 other upstream 573797 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 573797 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 573797 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 674074 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 774131 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 195726 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 401090 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1330425 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1489173 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1489173 3932787 ~ 3936037 (+) False G1701654

Expression Profile