RNA id: TU1946834


Basic Information

Item Value
RNA id TU1946834
length 1528
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G1701128
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2444182 ~ 2446574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCTcaagataataaaaaaaaatagcttttgCCTCCAAATTCTGAATCTGGGtaacgatggagagagagaaaaaaacaagaagaagaaaaGAAAGAGGATGTGTCACATTTGACAGTGGACTCATACAGCTACCCCAGTATCTGGTAGTTTGTAACAGAAACATTTGGCTACTTTGTGGccaaatgaacacgacccagattCAGCCCATCCACCTCTGTTGCAAgaaagtaaaaaaaattaaaaaaaagaagttttgctacggtgtgccctaatgaacacgacccagattCAGCCTATCCACCTCTCTTTTTTAACCATGTCACACACCTAGGAAAGACCCTGAGACAAGGatgtctctccttctctgctctctATCTTCAGCATGTCACATGGAGGAATGGCCACAGGCAGGTTCATTACAGCGAGTTTGTGttttgttgagagagagagagagagagagagagagagagagaaagggagagagagagagagagatagagagagagagagagagacagaaaactaactcacagacagacagcctaaagcagagaggcagaaaaCTAACTCACAGACAGCAAGGTTTTTGACAGACCACGAGCAGCAGAGTTTTCAGGAATGGCAAAGACAGTTGATTACATTTTTAGGTTTCCAAGAGCAATTCGCTTTATAAGTAATGACATCTCACTCCTTAATTCATCCACACAAGGACAAAGGAGGGGCCATGCCAAGACTTTGGAGTTGTTTCACGAGGTTGCTACACTGAACCAGCATTGAAGTCCCTAATTGTCCTAGTTCTAAGTGCTGGAGAGCTCTGAGGTAAAGGTAGATATGACCTGTGACCagcaagggaggagaggaggagagggagagaggatgaagagagggagagaggatgaggagagggagagaggatgaagagagggagagaggatgaagagagggagagaggatgaagagaggaaaaAGAGCTGGACGGTGCACCAGACATGAGGTCATTCTcctggagagaagaagaaagacgggatgaggaaaagagaggtcGACAACCCGGAGCTGAGCTCTGAAGATACCTCAGGAATCGCCTCAGAGGGCTTTTAAACCTAATCTCAGATCCAAGTATTTGTCTGGAGAGGCCACTGATGTTTGGCATTAGTAGTCGGTTGCGTCTACCAAAAAGCAAGAGGAAGTAAGTAGAAGAAGACAACAGAACGAGGAACGGAGGAAAGGGGTGAACTAGAACGCGGGCCGCTCTGACCTGACCCTCGTCCCGGTGATATTTCATTTCACGAGCGATCCAGCTCCTTGGAAAGGGTTCAGTCCTGGAAGGCGGTGACTTGGCCACTTGATACCTCTATCCAGGTTAAcaccctgctgctgctatgctGCCGCTATGCCTGGCCAAAGAACAAAGAGGCAGAACACAAGACGTCTCTGTCCTGCCCCAGCGCAGTGGGGGAGCAATACACATCATTACCACAGGTTTTCATTCTGACCTCTAAAACACATGAATAAgaatcttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946836 lncRNA downstream 570 2443276 ~ 2443612 (-) True G1701129
TU1946798 lncRNA downstream 46825 2396388 ~ 2397357 (-) True G1701108
TU1946795 lncRNA downstream 56736 2383303 ~ 2387446 (-) True G1701105
TU1946785 lncRNA downstream 106084 2337821 ~ 2338098 (-) True G1701096
TU1946760 lncRNA downstream 153184 2284314 ~ 2290998 (-) True G1701073
TU1946840 lncRNA upstream 4683 2451257 ~ 2451491 (-) True G1701133
TU1947670 lncRNA upstream 42581 2489155 ~ 2491962 (-) True G1701797
TU1947676 lncRNA upstream 62030 2508604 ~ 2508842 (-) True G1701803
TU1947677 lncRNA upstream 62484 2509058 ~ 2511488 (-) True G1701804
TU1947683 lncRNA upstream 73221 2519795 ~ 2520563 (-) True G1701807
XM_036956605.1 mRNA downstream 220982 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 220996 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 285226 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 294471 2143995 ~ 2149711 (-) False LOC118942827
XR_005038457.1 mRNA upstream 582775 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 1141956 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 1141956 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 1141956 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 1141956 3588530 ~ 3998526 (-) False LOC110499739
TU1946724 other downstream 254516 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 320295 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 998306 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 1120819 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 2089673 352487 ~ 354509 (-) True G1700312
TU1947726 other upstream 126100 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 337368 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 782428 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 834528 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 1139290 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile