RNA id: TU1947683


Basic Information

Item Value
RNA id TU1947683
length 442
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G1701807
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2519795 ~ 2520563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcGATCATATATAGCAGCGCCAGCTCTGTGGGGACACCACCGTTACAGAACACCTGCACCCAGTTCCTCTGACCACCTTCTTTATAGTCAGAGTCTAGTTTCTTCTTGACGTCTTCTTTCCAGCGTGTCAGCTTGGAGGAAGTGATGAAGAAAGCCAGCAGGGCAGAGAAGAAACTCATGTTGGCCATGGTGAGAATGAAGCCGACCAACAGGGCTGTAGGGGACAGGGAACAAAAGCATGAAAACAATACAACTCACTCttacctgatcccagatctgtttgtacttGTTCATAGCCAACTCTTTGGGCCGTTGTTATGACCACGGGAGCCGGctctaacagatctgggaccaggttacaaaCTAGGTCTAAACTACCTTATCAGAACAGTACTACAGAACCTCTACTCTCTCGGTATGTTTgagaaaatcatgatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947677 lncRNA downstream 8307 2509058 ~ 2511488 (-) True G1701804
TU1947676 lncRNA downstream 10953 2508604 ~ 2508842 (-) True G1701803
TU1947670 lncRNA downstream 27833 2489155 ~ 2491962 (-) True G1701797
TU1946840 lncRNA downstream 68304 2451257 ~ 2451491 (-) True G1701133
TU1946833 lncRNA downstream 73221 2444182 ~ 2446574 (-) False G1701128
TU1947686 lncRNA upstream 2267 2522830 ~ 2525359 (-) True G1701809
TU1947699 lncRNA upstream 10949 2531512 ~ 2532892 (-) True G1701815
TU1947754 lncRNA upstream 41934 2562497 ~ 2563704 (-) True G1701837
TU1947727 lncRNA upstream 52040 2572603 ~ 2575261 (-) False G1701824
TU1947730 lncRNA upstream 52040 2572603 ~ 2575261 (-) False G1701824
XM_036956605.1 mRNA downstream 296595 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 296609 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 360839 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 370084 2143995 ~ 2149711 (-) False LOC118942827
XR_005038457.1 mRNA upstream 508786 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 1067967 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 1067967 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 1067967 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 1067967 3588530 ~ 3998526 (-) False LOC110499739
TU1946724 other downstream 330129 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 395908 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 1073919 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 1196432 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 2165286 352487 ~ 354509 (-) True G1700312
TU1947726 other upstream 52111 2572674 ~ 2575261 (-) False G1701824
TU1947895 other upstream 263379 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 708439 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 760539 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 1065301 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile