RNA id: TU1946887


Basic Information

Item Value
RNA id TU1946887
length 360
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1701173
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2535371 ~ 2535876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacactggacacacacacactggacacacacacactggacacacacacacacacacactggacacacacacacacactggactcacacacacacacacacacactggacacacacacacacacacactggacacacacacacacacacactggacacacactcacacacacacacacacactggacacacactcacacacacacactggacacacacacacacacactggacacacactcacacacacacacacacacacactggacacacacacacaccagtctaaagtttggacacctactcattccagggttcttctttatttttctattttctacattgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946881 lncRNA upstream 31582 2503461 ~ 2503789 (+) True G1701167
TU1946879 lncRNA upstream 38346 2496392 ~ 2497025 (+) True G1701165
TU1946877 lncRNA upstream 42853 2490955 ~ 2492518 (+) True G1701163
TU1946844 lncRNA upstream 79509 2455662 ~ 2455862 (+) True G1701137
TU1946843 lncRNA upstream 80969 2454081 ~ 2454402 (+) True G1701136
TU1946868 lncRNA downstream 42057 2577933 ~ 2578978 (+) True G1701154
TU1946898 lncRNA downstream 47885 2583761 ~ 2583988 (+) True G1701184
TU1946900 lncRNA downstream 50305 2586181 ~ 2586423 (+) True G1701186
TU1946908 lncRNA downstream 55535 2591411 ~ 2591699 (+) True G1701193
TU1946913 lncRNA downstream 71330 2607206 ~ 2609450 (+) True G1701196
trnak-cuu-147 mRNA upstream 2042 2533257 ~ 2533329 (+) True trnak-cuu-147
trnak-cuu-146 mRNA upstream 6426 2528873 ~ 2528945 (+) True trnak-cuu-146
trnak-cuu-145 mRNA upstream 7069 2528230 ~ 2528302 (+) True trnak-cuu-145
trnak-cuu-144 mRNA upstream 7662 2527637 ~ 2527709 (+) True trnak-cuu-144
trnak-cuu-143 mRNA upstream 8371 2526928 ~ 2527000 (+) True trnak-cuu-143
XM_036956610.1 mRNA downstream 5132 2541008 ~ 2575182 (+) True LOC110500958
XM_036956611.1 mRNA downstream 43356 2579232 ~ 2580459 (+) True LOC110519746
XM_036956612.1 mRNA downstream 52766 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA downstream 52766 2588642 ~ 2667278 (+) False LOC110519348
XM_036958449.1 mRNA downstream 194765 2730641 ~ 2731813 (+) True LOC118942987
TU1945284 other upstream 665817 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 665817 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 665817 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 766094 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 866151 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 103464 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 308828 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1238163 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1396911 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1396911 3932787 ~ 3936037 (+) False G1701654

Expression Profile