RNA id: TU1947738


Basic Information

Item Value
RNA id TU1947738
length 2620
lncRNA type antisense_over
GC content 0.46
exon number 5
gene id G1701824
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2572603 ~ 2577051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTAATTCTTACGGAGACCAGAGGCTGTAGTGACTGGGTTTAACCAGTCAGCAAACGAAATTAAGCTTTTCATCCTGGTGCAGAATAAACCAGGGCAGAGTAgcacacctgggttcaaacactataCGATATCATTACCAATACTTCAGCTGTGACTGAGTTTGGAACTAAAAGTGTAAACCCTGCGTTTCTGGCACAAGCAAACATTGTTGAATAGtctttgaacccaggtctgtagagTAAAGACCAATCATGAATCTCTCCCCGTTTCCCTGCAGAAATCCACCATAGACATGTAATTAAATAACATGAGATCTGGAATGAAGTCTCCCTCCCCGTAGGTCTCCTCTTGGTGGAGCCGGCGCCGTTGGTATCGACTCAAGAAGTTACACTTTTACAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAATCAGAAGCAGTAGAACATGTCCTCCTCCAAATCAGAAGCAGTGCGTGACGACCGAACCGTATGTATTCTGAATATGTTTGAGTCTAAGTTCAAAACGGTTGGAGGATGTGAAGCGAAGCTTCAATTTGTTTCATTAAAAATAAATGACAATGTATTTGACACCTATGTGTTGTAAATAGTTATAATTGTTCTATTACAAAACACACGACActagcagtttaaaaaaaattacaattccAGAAAGTGTGCTTTCATCCACAATTGTTATTTCATTTTACAATCATTAAACAAGACTATTGTACACTTTTCTACACCTGCGTATCGTTTCCCCAAAGCTTGTAAAAAGCAGATAAAACATCCAACGTTGTTCATACGGTTTTTTTTGGGTTGTTTTTTtaacaatgtattttttttgtgtgtcattTACATTTTTCACAGAGCAACTCGGCAAACAGGAAGAAAACTCAGTATAACAAAAGCATTGGTAGTGACGGGTCAGTGCAAAACACCTGCATTTTAAATCAGAGAGAAagaccaagagagaggagggggaagagagaactgccatttttctgttgttgttgttgaaaaagcACAATgcctgtattcataaagagtCTCAGAGCAgaaatgctgatctaggatcagtttagtctTTTAGAACTTAAATCAACAAGGTTACAGAGACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAgaggctttatgaatacagGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAAGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTAGAGAACACAGGTGGGACTCCTACCGAGAGGCTTTATGAACACAGGTGGGACTCCTACCGAGAAGCTTTATGAAGACAGGCCAAGAAAAGAGCTAGATGATGGAATCAGAGGGCTTTCACCACTTCaccaccacagaagaagaagcagtACCAAGGGCTTGGACACATGTCCATACAACATGTACTTTAGTTTATCAACAATAAAGAAAGATCAGGTTTTTCATTTCTTCTCTCTCTAAAGTGAAACAAAATGAAGCCTTCAGAGACGGATCACCCCGTCATGCACATTATCCTCGCATCTGGGGTATGAGTGTTTATGATTTATAATTTAGTACGGTCTGTTGGTTTGTGTTCATTTGAGAGAGGTGGggacagtgtgtgagtgtgtatttcaCACTAGTGTGTTAGAAGTCCATCTGCTAGTTTgtagaaagacagaggagaggcaGATTCATTCCTTCCATGTTCTCTTCATCACTCAAAGGTCTCATATGGATGGGTCAGGAGGGGGTGTCAGAGGTCTCATATGGATGGGTCAGGAGGGGGTGTCAGAGGTCTCATATGGATGGGTCAGGAGGGGGGGCCAATGAATGAATATTACAGTGTAAAGAATGGTATATAAGCACATTGTTCCATAGAGGGAGAAGTGTAGTGAGTAAAGTGGATGATGACTCAGAGGGAGAACAGCAGTCTTCATGTCAtaaggagggagatgagaggggaggcaACAGTCCTGGTTGCTTAAggggggggaagggggaggaTGGGGTAAGTTGggatgtggaggtggggggggggttgggacGTGGAGAGGTAAGTTAGGGGGTGGGGGGTTAAGCGGATGAGCAGCAGCCCCCTGCGGCCGTGGCGGCTTGAGGGTCATCGTCCACGATCTGTACCCCCCTTCGTGATGTCGTTGACTGGCTGGCTCCGTTACCCTTCGCCCTCTCCTCTGCTTGGGCCGTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947754 lncRNA downstream 8970 2562497 ~ 2563704 (-) True G1701837
TU1947699 lncRNA downstream 39782 2531512 ~ 2532892 (-) True G1701815
TU1947686 lncRNA downstream 47315 2522830 ~ 2525359 (-) True G1701809
TU1947683 lncRNA downstream 52111 2519795 ~ 2520563 (-) True G1701807
TU1947677 lncRNA downstream 61186 2509058 ~ 2511488 (-) True G1701804
TU1947758 lncRNA upstream 1091 2577138 ~ 2577347 (-) True G1701841
TU1947759 lncRNA upstream 1981 2578028 ~ 2578538 (-) True G1701842
TU1947745 lncRNA upstream 2526 2578573 ~ 2578974 (-) True G1701828
TU1947760 lncRNA upstream 3297 2579344 ~ 2580448 (-) False G1701843
TU1947762 lncRNA upstream 3297 2579344 ~ 2580448 (-) True G1701843
XM_036956605.1 mRNA downstream 349474 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 349488 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 413718 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 422963 2143995 ~ 2149711 (-) False LOC118942827
XR_005038457.1 mRNA upstream 453302 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 1012483 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 1012483 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 1012483 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 1012483 3588530 ~ 3998526 (-) False LOC110499739
TU1946724 other downstream 383008 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 448787 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 1126798 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 1249311 1319227 ~ 1323363 (-) True LOC110511372
TU1945775 other downstream 2218165 352487 ~ 354509 (-) True G1700312
TU1947895 other upstream 207895 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 652955 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 705055 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 1009817 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 1009817 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile