RNA id: TU1946868


Basic Information

Item Value
RNA id TU1946868
length 1046
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1701154
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2577933 ~ 2578978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaccactttattttaagaatgtgcgatgccagaataatattagagagaatgatttatttcagcttttatttctttcatcacattcccagttggtcagaagtttacatgctaccaaatactaattgagtgtattgccattcaattgtttaacttgggtcaaacgtttcgggtagccttccacacgcttctcacaataagtctctaagaacgagtctccttcctgagcagtatgatggctgggtggtcccacggtgtttatacttgcatactattgtttatacagatgaacgtggtaccttcaggcgtttggaaattgctcccaaggatgaaccagacttgtggaggtctataatttgtttttggaggtcttggctgatttctttagattttcccatgatgttaatcaaagaggcactgagtttgaaggtagaccttgaaatacatccacaggtacacctccaattgacttaaatgatgtcaatcagaagcttctaatgtcATGACATAATtatttggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttgtaaaaatgacttgtgtcattcacaaaatagatgtcctaacagacttgccaaaaatatagtttgttaacaagaaaagtgtggagtggttgaaaaacgacttaatgactccaactgtatgtgcaccacgtcattgatcgctctctctctctgctgtgtccacTGAGTCCTGCAAACCCATTGGGTAACGCTGGGCAGGCCTCTtcctagctgtcactcaaatgcagGAGGTTGGCGCTCATTGGCTATAACttgaattgctagggggctggcccacgtTGGTGGAAATGTAGAGAAAATGGCTTTAAAAACCAGTTGCTTTTAAACTATGGATTTGATGGTTAATTGAGGTaaagtaattctgctcatagattaagCAGGTATGACCTATACAtggacacatccagcccaaagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946866 lncRNA upstream 38294 2533779 ~ 2539639 (+) True LOC110499736
TU1946887 lncRNA upstream 42057 2535371 ~ 2535876 (+) True G1701173
TU1946881 lncRNA upstream 74144 2503461 ~ 2503789 (+) True G1701167
TU1946879 lncRNA upstream 80908 2496392 ~ 2497025 (+) True G1701165
TU1946877 lncRNA upstream 85415 2490955 ~ 2492518 (+) True G1701163
TU1946898 lncRNA downstream 4783 2583761 ~ 2583988 (+) True G1701184
TU1946900 lncRNA downstream 7203 2586181 ~ 2586423 (+) True G1701186
TU1946908 lncRNA downstream 12433 2591411 ~ 2591699 (+) True G1701193
TU1946913 lncRNA downstream 28228 2607206 ~ 2609450 (+) True G1701196
TU1946870 lncRNA downstream 52735 2631713 ~ 2632451 (+) True G1701156
XM_036956610.1 mRNA upstream 2751 2541008 ~ 2575182 (+) True LOC110500958
XR_002470000.2 mRNA upstream 37881 2533735 ~ 2540052 (+) False LOC110499736
trnak-cuu-147 mRNA upstream 44604 2533257 ~ 2533329 (+) True trnak-cuu-147
trnak-cuu-146 mRNA upstream 48988 2528873 ~ 2528945 (+) True trnak-cuu-146
trnak-cuu-145 mRNA upstream 49631 2528230 ~ 2528302 (+) True trnak-cuu-145
XM_036956611.1 mRNA downstream 254 2579232 ~ 2580459 (+) True LOC110519746
XM_036956612.1 mRNA downstream 9664 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA downstream 9664 2588642 ~ 2667278 (+) False LOC110519348
XM_036958449.1 mRNA downstream 151663 2730641 ~ 2731813 (+) True LOC118942987
XM_036956614.1 mRNA downstream 240909 2819887 ~ 3236356 (+) False LOC110499725
TU1945284 other upstream 708379 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 708379 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 708379 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 808656 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 908713 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 60362 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 265726 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1195061 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1353809 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1353809 3932787 ~ 3936037 (+) False G1701654

Expression Profile