RNA id: TU1947772



Basic Information


Item Value
RNA id TU1947772
length 311
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G1701853
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2592832 ~ 2593142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCATTCTGTCTCACAGCTCAGCTGGTGCTCTACCTGCCTGGTAGGCTTGTCTCCTGGGTCTTGGCTCGGACCCTGGTGCCGCTGGCCCCATTCAAACACAGAGCTAGACTCCTGGGAGAGAGAATACAGGTATACTCAGACCCACCCATATACTGTACtatctatatacagtacacacacctaCCCATATGCTGTACTATCCAcagtactgttcaaaagtttggggtcatgtagaaatgtccttgttttccatgaaaacatacctgaaatgagttgcaaaatgaataggaaatatagtcaagacgttgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1947771 lncRNA downstream 502 2592084 ~ 2592330 (-) True G1701852
TU1947770 lncRNA downstream 876 2591727 ~ 2591956 (-) True G1701851
TU1947768 lncRNA downstream 3308 2589054 ~ 2589524 (-) True G1701849
TU1947767 lncRNA downstream 3895 2588640 ~ 2588937 (-) True G1701848
TU1947764 lncRNA downstream 7912 2584538 ~ 2584920 (-) True G1701845
TU1947773 lncRNA upstream 1874 2595016 ~ 2595237 (-) True G1701854
TU1947774 lncRNA upstream 4778 2597920 ~ 2598267 (-) True G1701855
TU1947778 lncRNA upstream 13214 2606356 ~ 2606568 (-) True G1701859
TU1947781 lncRNA upstream 14015 2607157 ~ 2608609 (-) True G1701861
TU1947779 lncRNA upstream 14072 2607214 ~ 2609496 (-) True G1701860
XM_036956605.1 mRNA downstream 369632 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 369646 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 433876 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 443121 2143995 ~ 2149711 (-) False LOC118942827
XR_005038457.1 mRNA upstream 436207 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 995388 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 995388 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 995388 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 995388 3588530 ~ 3998526 (-) False LOC110499739
TU1947726 other downstream 17571 2572674 ~ 2575261 (-) False G1701824
TU1946724 other downstream 403166 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 468945 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 1146956 1369149 ~ 1445876 (-) True LOC118942825
TU1946269 other downstream 1269469 1319227 ~ 1323363 (-) True LOC110511372
TU1947895 other upstream 190800 2783942 ~ 2829582 (-) True G1701930
TU1948127 other upstream 635860 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 687960 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 992722 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 992722 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile