RNA id: TU1946913


Basic Information

Item Value
RNA id TU1946913
length 851
lncRNA type intronic
GC content 0.43
exon number 3
gene id G1701196
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2607206 ~ 2609450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcaatgtagagtggtaatgtagctgtcctctggctgtggtttAATTTAGAGTGGTAATGTAactgtcctctggctgtggttcaatgtgaaGTGGTAATGTAGCTGTCCTCTGGTTGTCGTTCAAtgtagagtagtaatgtagctttcctctggctgtggttTAATGTAGAGTGGTAATGTAGCTGTCCTTTGGCTGTGGTTTAATGTAGAGTGGTAatgtagctgtcctctggctgtggtttAATGTAGAGTGGTAATGTAGCTGTCCTTTGGCTGTGGTTTAATGTAGAGTGGTAATGTAGCTGTCCTTTGGCTGTGGTTTAATTTAGAGTGGTAATGTAACTGTCCTCTGGCTGTgtttcaatgtggagtagtaatgtagctatCCTCTGGCTGTGTTTCAATGTGGGGtaataatgtagctgtcctctggctgtggttcaatgtggtgtagtaatgtagctgtggttcaatgtggtgtagtaatgtagctgtcctctggctgtggttcaatgtagagtagtaatgtagctgtcctctggctgtgtttcaatgtagagtagtaatgtagctgtcctctggctgtgtttcaatgtagagtagtaatgtagctgtggttcaatgtagagtagtaatgtagctgtcctctggctgtggttcaatgtagagtagtaatgtagctgtcctctggctgtgtttcaatgtagagtagtaatgtagctgtcctctggctgtggttcaatgtagagtagtaatgtagctgtcctctggctgtggttcaatgtagagtagtaatgtagctgtcctctggctgtggttcaatgtagagtagtgatgtagctgtcctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946908 lncRNA upstream 15507 2591411 ~ 2591699 (+) True G1701193
TU1946900 lncRNA upstream 20783 2586181 ~ 2586423 (+) True G1701186
TU1946898 lncRNA upstream 23218 2583761 ~ 2583988 (+) True G1701184
TU1946868 lncRNA upstream 28228 2577933 ~ 2578978 (+) True G1701154
TU1946866 lncRNA upstream 67567 2533779 ~ 2539639 (+) True LOC110499736
TU1946870 lncRNA downstream 22263 2631713 ~ 2632451 (+) True G1701156
TU1946923 lncRNA downstream 24503 2633953 ~ 2702040 (+) True G1701204
TU1946906 lncRNA downstream 57018 2666468 ~ 2666879 (+) True LOC110519348
TU1946936 lncRNA downstream 62015 2671465 ~ 2672545 (+) True G1701214
TU1946956 lncRNA downstream 130671 2740121 ~ 2743926 (+) True G1701230
XM_036956611.1 mRNA upstream 26747 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 32024 2541008 ~ 2575182 (+) True LOC110500958
XR_002470000.2 mRNA upstream 67154 2533735 ~ 2540052 (+) False LOC110499736
trnak-cuu-147 mRNA upstream 73877 2533257 ~ 2533329 (+) True trnak-cuu-147
trnak-cuu-146 mRNA upstream 78261 2528873 ~ 2528945 (+) True trnak-cuu-146
XM_036958449.1 mRNA downstream 121191 2730641 ~ 2731813 (+) True LOC118942987
XM_036956614.1 mRNA downstream 210437 2819887 ~ 3236356 (+) False LOC110499725
XR_005038456.1 mRNA downstream 210437 2819887 ~ 3237572 (+) True LOC110499725
XM_036956615.1 mRNA downstream 776006 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 934202 3543652 ~ 3562592 (+) True irak3
TU1945284 other upstream 737652 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 737652 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 737652 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 837929 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 937986 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 29890 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 235254 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1164589 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1323337 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1323337 3932787 ~ 3936037 (+) False G1701654

Expression Profile