RNA id: TCONS_00004824


Basic Information

Item Value
RNA id TCONS_00004824
length 3632
RNA type mRNA
GC content 0.47
exon number 21
gene id XLOC_002591
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7988746 ~ 8033468 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTACTTGGCAACCCTTGGGCGCAATCTGTAACACCGGCAGAGCTCGTGCATAACGGGAGTGATCTTTTTATGCGATTAACTTAAACATAAGGCATCTTTTATACAGGCACGTTTTCAAGGCTAGAATAGCGTTAAGGTGTTGGTTCGTCAACACTTCTTCATCATCTCTATAAATCCTGCGCTATTTCTGTCGTTTCAATGGCAAGGCGGCAATTAAAGGTACAGACGCCTATCGATTATTATTGTCCAGCCAGCTAGAGGTTGCTCGTGCTGTGTCGGAGTGAATCTCGAAGGCCAGAGGCGGATTGGGTGATCCGGGTGTCCGGGAGAGGAGAGGGAAGATGGGCTCGGGGTTTCGGAGTGAGGAGATGTGCTTGGCGCAGCTGTTCCTGCAGTCCGGCTCGGCGTACGCCTGCATCAGCGAGCTGGGGGAGATGGGACTGGTCGAATTTCGAGATCTCAACCCCAGCGTCAGCTCCTTCCAGCGCCGATTCGTCAGTGAAATCAAGAGATGTGAGGAGATGGAGAGGATTCTGGGGTATCTGCTGAGGGAAATTAGGAAGGCTAATATTGCTGTGCCAGAGGCTGAAGTTCCTCCTGTTGCTCCTGCACCCAAAAATGTCTTGGAGATCATGGAGCAGCTGCAGAGGCTGGAGGTGGAGCTCAGTGAAGTAGCCAAGAATAAAGAGAAGCTGCAGAGGAACCTGCTGGAGCTGATGGAGTACACACACATGCTGAGGATCACACGCTCATTCGTGCACAGCCGCTCCAGGcaTGAAGCCTTGGGCCCTCAGTATGAAGAGTTTCCGTCTTTGGAGACTGAATCGGTGACAGGCTGCACCAGTATGCAGAGACTTGGTGCCAAACTCGGgttTGTCTCAGGATTGATCCAGCGGGTGAAGGTGGAGGCGTTTGAACGCATGCTGTGGCGAGTCTGTAAAGGTTACACCATTCTCAGCTACGCAGAAGTGGACGAGAGCCTGGCTGATCTCGACACAGGGGAGATCAGGAAGAATGTGGTGTTTCTCATCTCCTTTTGGGGCGATCAGATTGGGCAGAAGGTGCAAAAGATTTGTGACTGTTACCACTGTCATATTTACCCTCATCCCGAGACAGACGAGGAAAGAGCCGATGTTATGGACAGCCTGAGAACACGCATTCAAGACTTGCACAATGTTTTGCACCGCACTGAGGATTACTTGAAGCAGGTCTTGCATAAAGCTTCAGAGTCAGCCCAGTCTTGGGTTCTGCAGGTGAAGAAGATGAAGGCCATTTATCACATCCTCAACCTCTGCAGCTTCGATGTCACAAATAAGTGTCTCATTGCTGAAGTGTGGTGTCCTGTCAGTGACCTGGCCAACCTGCGGCGGGCGCTCGAGGAGGGGTCGAGAAAAGGAGATGCCACAGTCCCATCTTTTGTGAACCGTATCCCGAGCAGCGACACTCCACCAACACTTTTAAGGAGCAACAAGTTTACCTCAGGCTTTCAGAGTATAGTGGAAGCCTATGGAGTGGGTGACTACAGAGAGGTCAGCCCAGCTCCGTTTACCATTATCACTTTTCCCTTCCTGTTTGCGGTCATGTTCGGAGATCTTGGTCATGGATCAGTCTTGACGCTCTTTGCTTTGTGGATGGTGTTAACTGAGAAAGATCACACAAGGAGACGACCAGGAAATGAGATCCGGATGACCTTATTTGACGGGCGGTACATCATACTGATGATGGGCTTGTTCTCCATATACACTGGGCTCATTTATAATGACTGTTTCTCCAAATCCCTCAACATCTTTGGCTCAGCATGGAGCGTCAAGGCCATGTTCACAGAACAAGAGTGGACAAATGAAACTCTACGATCAAATATGTTACTCACCTTGAATCCCAATGTTTCGGGTGTTTTCTCTGGGCCGTATCCTTTGGGCATTGATCcaATCTGGAACATGGCCGTGAACCGCCTTACCTTCCTCAACTCCTACAAGATGAAGATGTCTGTGATCATCGGCGTTGTCCACATGAGCTTCGGTGTTGTGCTCAGTGTCTTTAACCACCTGCACTTCCGACAGAAGTACAAGATCTATCTCCTTTTTCTTCCTGAGCTGCTCTTTCTGCTTTGCCTCTTTGGGTACTTGGCCTTTATGATCTTTTACAAATGGCTGGCGTACACAGCACGAGACTCACAGCTGGCACCGAGTATCCTCATCCACTTCATCAACATGTTCCTAATGCAGGCCAATGCCACCTCACCTCTTTATCCCGGCCAGATGGGACTGCAGGTGTTTCTGGTGGTGGTGGCGCTGCTGTCGGTGCCAGTGCTGCTGCTTGGCAAACCTCTGTATCTGTACTGGCTGCATCACGGCGGGAAGAGTCTGGGGATCCACAGGGGCTATGAGCGAGTGCGACGTGTGAGTGAAGAAGATCTGTCCCCATCTGTAGTTCATGATGAAGAGGAAGGACTGAGCGAATCAGGAGGCCCTCAAGAGTTTGATTTCGGAGACGTCTTTCTGCATCAAGCCATTCACACCATAGAGTACAGTCTGGGCTGTATTTCCAACACAGCCTCCTACTTGCGGCTCTGGGCCCTGAGTCTCGCCCACGCTCAGCTGTCGGAGGTGCTGTGGGCGATGGTGATGCGTCTCGGTTTGAGGATCAGCTCCAGACTGGGCGTTATTTTCCTTGTGCCAGTGTTCAGTGTGTTTGCTGTGCTCACCATCTCCATACTGCTGGTGATGGAGGGTTTGTCTGCTTTCCTCCATGCTCTGCGTCTTCACtgGGTGGAATTTCAGAACAAATTCTACAGTGGAGCAGGAGTCAAATTCGCCCCCTTTGACTTCTCCCTGTTACCCTCAGTCTTCGAACAGGATGGGTTACTCTGATCGAAACCCACCAGTTTCTGAACAGGACATCATAGCTTATCGTGACCTGTTGACCTTTGGGCATTGGACAATTTCAGCAGCTGTAAAGGGAAGATAAAAACAAGCATTTTTGCACTGCCCTGTGAAACACGGTCACAGTCAGAACAGCAGGCTACGGTGTTATTTGTACCAGTTCATATCAGATGTTTCTGGTGCTGGATTATCATCTGTGGCTCCACCATCAGCTTTCATTTAAGGAGTGTCAACAAAGTCCTGTTATATTAATCTCAAGAGATATGACTTGTATTTGTAATTGCATTATCTTAAGCATTTGCTGTCATATCGATTTTCAAAGTGccataaatatttttcaatgtaCAGTTTTGTAATGCTACTACACTGAAACGTACTTTTGCTTGCTTTAGTTAGGTCTTAAACATAGAAGAACATTTGCAGGTAAATTATGGTGTAGGCGATACTGCACTGTGCTGAGAACAATGCcaaataacaattataattttCAATGTTATATTAAAGTATAATTTTACAGCATTTAGCGTGCAAAGCAGGTTTGCGGGATAGCATTTTTTGTCCAGAATTAGTTATAAGACAATATTCTTATTACATGATACATTTCTGTTTTTCCAATACATGTGTTTATGGTTTAATACGTCaacatatggatttattattttgtttgcagtttttttttcatccacATTCTTGTAAATTTACATTTGTGTTTCAACCGCTTATAAACaagatattattataaaaaaa

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0007035 vacuolar acidification biological_process
GO:0006811 ion transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-4 Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).

Ensembl:

ensembl_id ENSDART00000140476

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005749 lncRNA downstream 5002 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004822 lncRNA downstream 8751 7976969 ~ 7979995 (-) False XLOC_002589
TCONS_00004821 lncRNA downstream 9022 7976348 ~ 7979724 (-) False XLOC_002589
TCONS_00005747 lncRNA downstream 102706 7883753 ~ 7886040 (-) False XLOC_002586
TCONS_00005748 lncRNA downstream 102809 7884013 ~ 7885937 (-) False XLOC_002586
TCONS_00004828 lncRNA upstream 11949 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00004840 lncRNA upstream 232803 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00005997 lncRNA upstream 585250 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00004846 lncRNA upstream 585381 8618849 ~ 8621273 (-) True XLOC_002602
TCONS_00005998 lncRNA upstream 605453 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00004820 mRNA downstream 329 7975585 ~ 7988417 (-) False XLOC_002589
TCONS_00004823 mRNA downstream 350 7979080 ~ 7988396 (-) True XLOC_002589
TCONS_00004817 mRNA downstream 14591 7916720 ~ 7974155 (-) False XLOC_002588
TCONS_00004818 mRNA downstream 14591 7918018 ~ 7974155 (-) False XLOC_002588
TCONS_00004816 mRNA downstream 75155 7902345 ~ 7913591 (-) True XLOC_002587
TCONS_00004826 mRNA upstream 1220 8034688 ~ 8041948 (-) True XLOC_002592
TCONS_00004827 mRNA upstream 11896 8045364 ~ 8046764 (-) False XLOC_002593
TCONS_00004829 mRNA upstream 18148 8051616 ~ 8053753 (-) False XLOC_002594
TCONS_00004830 mRNA upstream 18534 8052002 ~ 8053385 (-) True XLOC_002594
TCONS_00004831 mRNA upstream 25382 8058850 ~ 8079830 (-) False XLOC_002595
TCONS_00004819 other downstream 28908 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 96062 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 96880 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 476623 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 636636 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004848 other upstream 642422 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 983253 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 1003890 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 1108097 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 1501314 9534782 ~ 9538326 (-) False XLOC_002618

Expression Profile

//