RNA id: TU1946956


Basic Information

Item Value
RNA id TU1946956
length 355
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1701230
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2740121 ~ 2743926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtcagacattcctattagcagtcagacattcctattagcagtcagatatccctattagcagtcagacattcctattagcagtcagacatccctattagcaggtgaagagagattcctaatagcagtcagacattcctattagcaggtgaagagagattcctattagcagtcagacattcctattagcaggtgaagagagattcctattagcagtcagacattcctattagcagtcaaacattcctattagcagtcagacatccctattagcagtcagacattcctattagcagtcagacatccctattagcagtcagacatccctattagcagtcagacatccctattagcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946923 lncRNA upstream 38081 2633953 ~ 2702040 (+) True G1701204
TU1946936 lncRNA upstream 67576 2671465 ~ 2672545 (+) True G1701214
TU1946906 lncRNA upstream 73242 2666468 ~ 2666879 (+) True LOC110519348
TU1946870 lncRNA upstream 107670 2631713 ~ 2632451 (+) True G1701156
TU1946913 lncRNA upstream 130671 2607206 ~ 2609450 (+) True G1701196
TU1946960 lncRNA downstream 11681 2755607 ~ 2756065 (+) True G1701234
TU1946962 lncRNA downstream 19764 2763690 ~ 2764041 (+) True G1701236
TU1946965 lncRNA downstream 29503 2773429 ~ 2774646 (+) True G1701238
TU1946999 lncRNA downstream 77414 2821340 ~ 2822497 (+) True G1701260
TU1946974 lncRNA downstream 83088 2827014 ~ 2841800 (+) True G1701243
XM_036958449.1 mRNA upstream 8308 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 72843 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA upstream 72843 2588642 ~ 2667278 (+) False LOC110519348
XM_036956611.1 mRNA upstream 159662 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 164939 2541008 ~ 2575182 (+) True LOC110500958
XM_036956614.1 mRNA downstream 75961 2819887 ~ 3236356 (+) False LOC110499725
XR_005038456.1 mRNA downstream 75961 2819887 ~ 3237572 (+) True LOC110499725
XM_036956615.1 mRNA downstream 641530 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 799726 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 821713 3565639 ~ 3583498 (+) True helb
TU1946903 other upstream 86502 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 870567 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 870567 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 870567 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 970844 1758469 ~ 1769277 (+) False LOC110499743
TU1947013 other downstream 100778 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1030113 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1188861 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1188861 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 1190004 3933930 ~ 3936037 (+) False G1701654

Expression Profile