RNA id: TU1947944


Basic Information

Item Value
RNA id TU1947944
length 431
lncRNA type intronic
GC content 0.48
exon number 3
gene id G1701967
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2860382 ~ 2860900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGTCTGTTTCTATGGTTCATATTGATTGGTGGTAGCCGAAGGGCCAGTCAGTTTCTGTTCCTTGTGGTATTTTGATGCCTAACATTGGCATGGAGGAAAGATGGAGTCAAACTATATTTCCCTTTAggatacagtaggccactgagaagtgtcctccatcacaccctttaggatacagtaggccactgagaagtgtcctccatcacaccctttaggttacagtaggccactgagaagtgtcctccatcacaccctttaggttacagtaggccactgagaagtgtcctccatcacaccctttaggttacagtaggccactgagaagtgtcctccatcacaccctttaggttacagtaggccactgagaagtgtcctctgtcccaccctttaggttacagtaggccactgagaagtgtcctctGTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947936 lncRNA downstream 6173 2852900 ~ 2854209 (-) False G1701961
TU1947934 lncRNA downstream 6173 2853490 ~ 2854209 (-) True G1701961
TU1947935 lncRNA downstream 7111 2852814 ~ 2853271 (-) False G1701961
TU1947831 lncRNA downstream 80008 2779029 ~ 2780374 (-) False G1701893
TU1947834 lncRNA downstream 80008 2779029 ~ 2780374 (-) True G1701893
TU1947953 lncRNA upstream 14049 2874949 ~ 2892965 (-) True G1701976
TU1947954 lncRNA upstream 15995 2876895 ~ 2895091 (-) True G1701977
TU1948000 lncRNA upstream 139512 3000412 ~ 3000873 (-) True G1702016
TU1948031 lncRNA upstream 182952 3043852 ~ 3044528 (-) True G1702039
TU1948066 lncRNA upstream 242504 3103404 ~ 3105433 (-) True G1702068
XM_036956605.1 mRNA downstream 637182 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 637196 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 701426 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 710671 2143995 ~ 2149711 (-) False LOC118942827
XR_005038457.1 mRNA upstream 168449 3029349 ~ 3030468 (-) True LOC118942830
XM_036956625.1 mRNA upstream 727630 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 727630 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 727630 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 727630 3588530 ~ 3998526 (-) False LOC110499739
TU1947895 other downstream 30800 2783942 ~ 2829582 (-) True G1701930
TU1947726 other downstream 285121 2572674 ~ 2575261 (-) False G1701824
TU1946724 other downstream 670716 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 736495 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 1414506 1369149 ~ 1445876 (-) True LOC118942825
TU1948127 other upstream 368102 3229002 ~ 3230041 (-) True G1702117
TU1948153 other upstream 420202 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 724964 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 724964 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other upstream 724964 3585864 ~ 3588587 (-) False LOC110499739

Expression Profile