RNA id: TU1947036


Basic Information

Item Value
RNA id TU1947036
length 231
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1701279
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2878732 ~ 2879497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagggtggcatttggtaAGCAGCACCACTTAAACACTGAAACTTCTCTAAGGCTAACTACCGGCTTTGCTTTCACTGTCAGAGGAAGGTAGTGGGGAAATGgaaggcgggagggagggagagagataaagacaagagagacagaaacagagagagcgagaggagtatgagagagacagagagagagggagagatcgagcgggagagagagaggtagagaaagagacagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947022 lncRNA upstream 24555 2852982 ~ 2854177 (+) True G1701266
TU1947014 lncRNA upstream 29129 2844704 ~ 2849603 (+) False G1701265
TU1947021 lncRNA upstream 30624 2846982 ~ 2848108 (+) True G1701265
TU1947020 lncRNA upstream 32375 2844704 ~ 2846357 (+) False G1701265
TU1946974 lncRNA upstream 36932 2827014 ~ 2841800 (+) True G1701243
TU1947037 lncRNA downstream 355 2879852 ~ 2897953 (+) True G1701280
TU1947038 lncRNA downstream 1427 2880924 ~ 2899126 (+) True G1701281
TU1947053 lncRNA downstream 37553 2917050 ~ 2917675 (+) True G1701296
TU1947072 lncRNA downstream 70148 2949645 ~ 2950282 (+) False G1701313
TU1947073 lncRNA downstream 70148 2949645 ~ 2950282 (+) True G1701313
XM_036958449.1 mRNA upstream 146919 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 211454 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA upstream 211454 2588642 ~ 2667278 (+) False LOC110519348
XM_036956611.1 mRNA upstream 298273 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 303550 2541008 ~ 2575182 (+) True LOC110500958
XM_036956615.1 mRNA downstream 505959 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 664155 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 686142 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 1504519 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 1504519 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 29129 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 225113 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1009178 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 894542 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1053290 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1053290 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 1054433 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 1504559 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile