RNA id: TU1947073


Basic Information

Item Value
RNA id TU1947073
length 570
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1701313
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2949645 ~ 2950282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaaggagaggcggaccaaaacgcagcgtggttattgtgaCACGTCTTTAATGAAGATGATaaatgaacaatatacaaaacaataaatgtgggaaaaaaaacgaaaacagccctatctggtgtaacaaacacaaagacaggaacaatcacccacaaaaccccaacaccaaacaggctacctaaatatggttcccaatcagagacaatgactaacacatgcctctgattgagaaccatatcaagcccaaacacagaaacagacaaactagacacacaacatagaatgcccactcagatcacaccctgaccaaacaaaacatagaaacagacaaactagacatccaacatagaatgcccactcagatcacaccctgaccaaacaaaacatagaaacagacaaactagacatccaacatagaatgcccactcagatcacaccctgaccaaacaaaacacagaaacagacaaactagacatccaacatagaatgcccactcagatcacaccctgaccaaacaaaacatagaaacagacaaactagacatccaacatagaatgcccactcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947053 lncRNA upstream 31970 2917050 ~ 2917675 (+) True G1701296
TU1947038 lncRNA upstream 50519 2880924 ~ 2899126 (+) True G1701281
TU1947037 lncRNA upstream 51692 2879852 ~ 2897953 (+) True G1701280
TU1947036 lncRNA upstream 70148 2878732 ~ 2879497 (+) True G1701279
TU1947022 lncRNA upstream 95468 2852982 ~ 2854177 (+) True G1701266
TU1947175 lncRNA downstream 213241 3163523 ~ 3167185 (+) True G1701398
TU1947176 lncRNA downstream 213799 3164081 ~ 3168820 (+) True G1701399
TU1947199 lncRNA downstream 273850 3224132 ~ 3225043 (+) True G1701418
TU1947202 lncRNA downstream 277941 3228223 ~ 3228560 (+) True G1701421
TU1947210 lncRNA downstream 292520 3242802 ~ 3244362 (+) True G1701429
XM_036958449.1 mRNA upstream 217832 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 282367 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA upstream 282367 2588642 ~ 2667278 (+) False LOC110519348
XM_036956611.1 mRNA upstream 369186 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 374463 2541008 ~ 2575182 (+) True LOC110500958
XM_036956615.1 mRNA downstream 435174 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 593370 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 615357 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 1433734 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 1433734 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 100042 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 296026 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1080091 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 823757 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 982505 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 982505 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 983648 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 1433774 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile