RNA id: TU1947175


Basic Information

Item Value
RNA id TU1947175
length 357
lncRNA type intronic
GC content 0.34
exon number 3
gene id G1701398
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3163523 ~ 3167185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGTTGCCCTTCATTCTAATGATGACATCCTCACTATGTATGAAATGCAGGATTGTTGTTTCTCTAtatgttggtattaggtctagggttgataatagattaactagatgttggtactaggtctaggtttgatgatagattaactagatgttggtattaggtctaggtttgatgatagattaactagatgttggtactaggtctaggtttgatgatagattaactagatgttggtactaggtctaggtttgatgatatattaactagatgttggtattaggtctaggtttgatgatagattaactagatgttggtactaggtctaggtttgatgatatattaactactgtacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947072 lncRNA upstream 213241 2949645 ~ 2950282 (+) False G1701313
TU1947073 lncRNA upstream 213241 2949645 ~ 2950282 (+) True G1701313
TU1947053 lncRNA upstream 245848 2917050 ~ 2917675 (+) True G1701296
TU1947038 lncRNA upstream 264397 2880924 ~ 2899126 (+) True G1701281
TU1947037 lncRNA upstream 265570 2879852 ~ 2897953 (+) True G1701280
TU1947199 lncRNA downstream 56947 3224132 ~ 3225043 (+) True G1701418
TU1947202 lncRNA downstream 61038 3228223 ~ 3228560 (+) True G1701421
TU1947210 lncRNA downstream 75617 3242802 ~ 3244362 (+) True G1701429
TU1947221 lncRNA downstream 107965 3275150 ~ 3276857 (+) True G1701440
TU1947230 lncRNA downstream 139244 3306429 ~ 3306737 (+) True G1701449
XM_036958449.1 mRNA upstream 431710 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 496245 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA upstream 496245 2588642 ~ 2667278 (+) False LOC110519348
XM_036956611.1 mRNA upstream 583064 2579232 ~ 2580459 (+) True LOC110519746
XM_036956610.1 mRNA upstream 588341 2541008 ~ 2575182 (+) True LOC110500958
XM_036956615.1 mRNA downstream 218271 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 376467 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 398454 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 1216831 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 1216831 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 313920 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 509904 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1293969 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 606854 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 765602 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 765602 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 766745 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 1216871 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile