RNA id: TU1948127


Basic Information

Item Value
RNA id TU1948127
length 685
RNA type TUCP
GC content 0.34
exon number 2
gene id G1702117
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3229002 ~ 3230041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAATAATATCTACTTCATTGTCCATGTACATTTATATTCGTTTTGTGAAGTCAGCCTACCAATACACAAACACAATACACTATACTACATCACTATGGCAACAACAGGAACACTATAATACATCACTATGGAAACAACAGGAACACTATAATACATCACTATGGAAACAACAGGAACACTATAATACATCACTATGGAAACAACAGGAACACTATAATACATCACTATGGCAACAACAGGAACACTATAATACATCACTATGGAAACACAGGAAGACTATAATACATCACTATGGCAACAACAAGAACACTATAATACATCACTATGGAAACACAGGAACACTATAATACATCACTATGGAAACACAGGAACACTATAATACATCACTATGGAAACAACAGGAACACTATAATACATCACTATGGCAACAACAGGAACACTATAATACATCACTATGGAAACACAGGAACACTATAATACATCACTATGGAAACACAGGAACACTATAATACATCACTATGGAAACACAGGAAGACTATAATACATCACTATGGAAACACAGGAAGACTATAATACATCACTATGGAAACACAGGAATACTATAATCCATCACTATGGAAACACAGGAACATTAGTACACAAATCACACTACCGAAAACACAGGAACACTATAATACATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948116 lncRNA downstream 22033 3206501 ~ 3206969 (-) True G1702106
TU1948072 lncRNA downstream 118737 3109922 ~ 3110265 (-) True G1702072
TU1948069 lncRNA downstream 121355 3107221 ~ 3107647 (-) False G1702070
TU1948070 lncRNA downstream 121355 3107221 ~ 3107647 (-) True G1702070
TU1948066 lncRNA downstream 123569 3103404 ~ 3105433 (-) True G1702068
TU1948108 lncRNA upstream 5456 3235497 ~ 3237529 (-) False G1702104
TU1948109 lncRNA upstream 5456 3235497 ~ 3237529 (-) False G1702104
TU1948110 lncRNA upstream 5456 3235497 ~ 3237529 (-) False G1702104
TU1948111 lncRNA upstream 5456 3235497 ~ 3237529 (-) False G1702104
TU1948112 lncRNA upstream 5456 3235497 ~ 3237529 (-) True G1702104
XR_005038457.1 mRNA downstream 198534 3029349 ~ 3030468 (-) True LOC118942830
XM_036956605.1 mRNA downstream 1005802 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 1005816 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 1070046 2150983 ~ 2158956 (-) True LOC118942828
XM_036956600.1 mRNA downstream 1079291 2143995 ~ 2149711 (-) False LOC118942827
XM_036956625.1 mRNA upstream 358489 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 358489 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 358489 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 358489 3588530 ~ 3998526 (-) False LOC110499739
XM_036956619.1 mRNA upstream 358489 3588530 ~ 3998526 (-) False LOC110499739
TU1947895 other downstream 399420 2783942 ~ 2829582 (-) True G1701930
TU1947726 other downstream 653741 2572674 ~ 2575261 (-) False G1701824
TU1946724 other downstream 1039336 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 1105115 2122529 ~ 2123887 (-) True LOC110512520
TU1946284 other downstream 1783126 1369149 ~ 1445876 (-) True LOC118942825
TU1948153 other upstream 51061 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 355823 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 355823 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other upstream 355823 3585864 ~ 3588587 (-) False LOC110499739
TU1949213 other upstream 1212208 4442249 ~ 4444919 (-) False G1702914

Expression Profile