RNA id: TU1948111


Basic Information

Item Value
RNA id TU1948111
length 1821
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G1702104
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3235497 ~ 3237529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTGCTGCTCTGCTCAAAACACAGAACAATATAGTCCCTcatttagaaaaaaaaaacaattttttaatacatcaaaacaacaacaagaaaggAAAAGATGGCGAAGGTCTGAAACTGTTTTCTTCTTGAGGTCTACAGTATCAAGGATTAGCCATAGAGGATATAAATAGCACTGACTTTTACACAGAAAATAAGAGCAATGGACTCCCCAGTAAACCCAATGGGGATTTTCTCTACCAGCCAAGTGTCAACAGTAAAAACTCATTATTATGTTCTATTCTTCATGAAACGAGTCCACAGAGTATATCCAGCTAGCTGTTAGCATCGGCCTGTTAAGTTTACTGGGCTTTGCAGGGTAGCAACAAAACGAGGAATATCTGTCGGGAATATTGTAGAATATTTCCTCTGCTTTTGCTTAAAACACGGGTTTCTGAGTGAAACTTTGTTATGAAGTCATTAGCGGCACATGAAAACCCAAGCATGACGTCTGACCAAAACAACGTAAGTTTCTATATGTCATCATTACTACACCGCGGCTCACACAGGCTGTATCCACTGGCTCTCAGTCCCATCAGCAACGTGGACCATTTTGCACACAGAATATCAACCTGCAACTCACAAcagtttcattttttattttcactCAAACACCAAGACGGTATAATCCAAAAGGACACTCGGGTGCAACAAGCAAATATAAATGATGTAATTTAACGATAATCGATCAATAATCAATAGTGACTCCTTCGGGTTATGGGGGAGTCCCCCTTGTTCCTGCTTCCAACCTGCCTCCTGGGTTCTGCAGAGTCTCCCCCTGGCGTAATGTCATTTAGGGAAACCTCATTGGCTGAGGAAGGAGGATAAGTTATTATGGAACACACCACGCACAACAATGAACATCACTTCAGCCGCCACGCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCATCACTTCAGCCGCCACGCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCTCAAAAGACAAGGTTAAGATCCAAACCATTTAGGTACACATATTATTTTATTACGTTATACtttatatttgtttttgtttttgttgttgtcccaaTCAAAATAATGATTGTCATcattgaacaaaaaaaaaaaaatgatattacTTGTGCTTGTCACAGTTGTAATCATAATGCCGCCAGGTCCTCTTCCCGTGCCTCTTGTAGCTCTAGTTTGTCTTTCTCCCCATAGGCTACTAAAGAGTTGACCGGAGGTTCAAAGGTCATTGAAAAGGTCACAGGGGTCAGCTTAGTGGAAAACCAatcagaggagaggggtgaaaacCATGCGTTGAAAGGGAAAGTGTCACTGGAGATGAACGCCACCATGCAATATTTATACCTAATCACATCCACCTTCGACACGGTCGGTCAGACTAAGGTCATCTGAGCCAATCACGTCGTCTGTCTtcactgttccctctctctccggtTTTCCAGTCACTTTCTCAtcaagttttttttttgggggggggaggcGGGGAAATGTCTTATTTTGTAATTCAAATGAACATATTCAtgttttctgatatttttttttctccgcctgatgttgttgggtctgtaataGTTTCAGAGAGATGCCATGCTTGGGCTGAATGAACCCTGTTGGCTGTGTGTTAACCGTTGGGAGACTTCCTTAGCCACTGGAAGATCTGGCGTTCGTAGAGACTGTGCCATCTGACGTTGGCCTCCACGATCTCCACGGCCCGGGCCAACGCCGGCCCCGCTCCACCTCCACTGATCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948116 lncRNA downstream 28528 3206501 ~ 3206969 (-) True G1702106
TU1948072 lncRNA downstream 125232 3109922 ~ 3110265 (-) True G1702072
TU1948069 lncRNA downstream 127850 3107221 ~ 3107647 (-) False G1702070
TU1948070 lncRNA downstream 127850 3107221 ~ 3107647 (-) True G1702070
TU1948066 lncRNA downstream 130064 3103404 ~ 3105433 (-) True G1702068
TU1948158 lncRNA upstream 69329 3306858 ~ 3313340 (-) True G1702146
TU1948163 lncRNA upstream 70132 3307661 ~ 3314262 (-) True G1702147
TU1948199 lncRNA upstream 153621 3391150 ~ 3391890 (-) False G1702174
TU1948200 lncRNA upstream 153621 3391150 ~ 3438393 (-) True G1702174
TU1948231 lncRNA upstream 223783 3461312 ~ 3461758 (-) True G1702200
XR_005038457.1 mRNA downstream 205029 3029349 ~ 3030468 (-) True LOC118942830
XM_036956605.1 mRNA downstream 1012297 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 1012311 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 1076541 2150983 ~ 2158956 (-) True LOC118942828
XM_036956601.1 mRNA downstream 1085786 2143995 ~ 2149711 (-) True LOC118942827
XM_036956625.1 mRNA upstream 351001 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 351001 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 351001 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 351001 3588530 ~ 3998526 (-) False LOC110499739
XM_036956619.1 mRNA upstream 351001 3588530 ~ 3998526 (-) False LOC110499739
TU1948127 other downstream 5456 3229002 ~ 3230041 (-) True G1702117
TU1947895 other downstream 405915 2783942 ~ 2829582 (-) True G1701930
TU1947726 other downstream 660236 2572674 ~ 2575261 (-) False G1701824
TU1946724 other downstream 1045831 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 1111610 2122529 ~ 2123887 (-) True LOC110512520
TU1948153 other upstream 43573 3281102 ~ 3518377 (-) True G1702141
TU1948253 other upstream 348335 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 348335 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other upstream 348335 3585864 ~ 3588587 (-) False LOC110499739
TU1949213 other upstream 1204720 4442249 ~ 4444919 (-) False G1702914

Expression Profile