RNA id: TU1947210


Basic Information

Item Value
RNA id TU1947210
length 380
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1701429
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3242802 ~ 3244362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATGGAGACAATAAGAACAGCCGGGATATGGGTGCTTTTGTTGTCTCTCTCATGTTTTCCCCAAAGAGCAACACGGCTTGGTTTATAATTTCTGACTTATCCAAGAAGACCAAGCAAGGCCTCAGAATTGTATAACAGACATCCTTCCAGCTGTCTGGGAGTGATAGATTCAAAGGAAAATATCTTTAGCAATGCTCGATCCAATATTCTGAACTACTACACCCTACTCCATTATTCTGAACTACTACTACACCCCACTCCATTATTCTGAACTACTACACCacactccatctgtctccctacTGCTGGGCAgtaacagacacactctctctctcttttgatctatctctctctctccctcttcatatTGCTACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947202 lncRNA upstream 14242 3228223 ~ 3228560 (+) True G1701421
TU1947199 lncRNA upstream 17759 3224132 ~ 3225043 (+) True G1701418
TU1947176 lncRNA upstream 73982 3164081 ~ 3168820 (+) True G1701399
TU1947175 lncRNA upstream 75617 3163523 ~ 3167185 (+) True G1701398
TU1947072 lncRNA upstream 292520 2949645 ~ 2950282 (+) False G1701313
TU1947221 lncRNA downstream 30788 3275150 ~ 3276857 (+) True G1701440
TU1947230 lncRNA downstream 62067 3306429 ~ 3306737 (+) True G1701449
TU1947232 lncRNA downstream 63205 3307567 ~ 3308860 (+) True G1701451
TU1947238 lncRNA downstream 85457 3329819 ~ 3330124 (+) True G1701456
TU1947260 lncRNA downstream 130605 3374967 ~ 3377350 (+) True G1701474
XR_005038456.1 mRNA upstream 5230 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 6446 2819887 ~ 3236356 (+) False LOC110499725
XM_036958449.1 mRNA upstream 510989 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 575524 2588642 ~ 2667278 (+) False LOC110519348
XR_005038455.1 mRNA upstream 575524 2588642 ~ 2667278 (+) False LOC110519348
XM_036956615.1 mRNA downstream 141094 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 299290 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 321277 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 1139654 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 1139654 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 393199 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 589183 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1373248 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 529677 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 688425 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 688425 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 689568 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 1139694 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile