RNA id: TU1947221


Basic Information

Item Value
RNA id TU1947221
length 1476
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1701440
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3275150 ~ 3276857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctgtctctctctctgtatctctctgtctctctctctctctctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctctctgtctctctctctccctgtctctctctctgtctctcactctgtctctctctatctgtctctctctctctgtctatctctctctctgtctctctctctctctctctgtcgctatctctgtctctctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctctgtctccctctctgtctctctctctctctgtctctctctctgtctctctctctctctgtctctctctctgtctctctctctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctctgtctctctctctgtctctctctctctctctgtctctctctctctctctgtctctctctctctgtctctctctctgtctctctctctgtctctctctcactgtctctctctctgtctctctctctgtctctctctctgtctctctcgctctgtctctctgtgtctctctctctctctgtctctctctctctctgtctctctctctgtatctctctgtctctctctctctctctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctcactctgtctctctctctatctgtctctctctctctgtctttctctctctctgtctctctctctctctctctctctgtcgctatctctgtctctctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctctctctctctctctctgtctccctctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctctctctgtctctctctctctgtctctctctctgtctctctctctgtctctctctcactgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctcgctctgtctctctgtgtctctctctctctctgtctctctctctctctgtctctctctctgtatctctctgtctctctctctctctctctgtctctctctctctctctctctctctctctgtctctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctcactctgtctctctctctgtctctctctatctgtctctctctctctgtctttctctctctctgtctctctctctctctctgtcgctatctctgtctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947210 lncRNA upstream 30788 3242802 ~ 3244362 (+) True G1701429
TU1947202 lncRNA upstream 46590 3228223 ~ 3228560 (+) True G1701421
TU1947199 lncRNA upstream 50107 3224132 ~ 3225043 (+) True G1701418
TU1947176 lncRNA upstream 106330 3164081 ~ 3168820 (+) True G1701399
TU1947175 lncRNA upstream 107965 3163523 ~ 3167185 (+) True G1701398
TU1947230 lncRNA downstream 29572 3306429 ~ 3306737 (+) True G1701449
TU1947232 lncRNA downstream 30710 3307567 ~ 3308860 (+) True G1701451
TU1947238 lncRNA downstream 52962 3329819 ~ 3330124 (+) True G1701456
TU1947260 lncRNA downstream 98110 3374967 ~ 3377350 (+) True G1701474
TU1947287 lncRNA downstream 156542 3433399 ~ 3433867 (+) True G1701498
XR_005038456.1 mRNA upstream 37578 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 38794 2819887 ~ 3236356 (+) False LOC110499725
XM_036958449.1 mRNA upstream 543337 2730641 ~ 2731813 (+) True LOC118942987
XM_036956612.1 mRNA upstream 607872 2588642 ~ 2667278 (+) False LOC110519348
XM_036956615.1 mRNA downstream 108599 3385456 ~ 3391594 (+) True LOC110516257
NM_001281404.1 mRNA downstream 266795 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 288782 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 1107159 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 1107159 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 425547 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 621531 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1405596 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 497182 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 655930 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 655930 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 657073 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 1107199 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile