RNA id: TU1948153


Basic Information

Item Value
RNA id TU1948153
length 1117
RNA type TUCP
GC content 0.38
exon number 4
gene id G1702141
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3281102 ~ 3518377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAGATTAGATAAACGTGATCTGTCACACACGACAAGATACTGTAGGTCACCCCATTTGCAATTCAGACATTCAAAAGCGTATCGGAATTTAATCTAAatattaatcaaatcaaagtttatttgtcacgtgcgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtaaaatgcttacttacaggctctatccaatagtgcaaaaaatatattaggtgaacaataggtaagtaaagaaataaaaacaacagtaaaaagacagtgaaaacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagagatgctctatacagtagagaggctacatacagtagagaggctatatacagtagagaggctatatacagtagagaggttatatacagtagagagggtacatacagtagagaggctctatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagagagactatatacagtagaggctatatacagtagagaggctatatacagtagagaggctctatacagtagagaggttatatacagtagagaggctctatacagtagagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctataacagtagagaggctgtatacagtagagaggctatatacagtagagaggctatatacattagagaggctatatacagtagagaggctatatacagtagaggggctctatacagtagagaggctatatacagtagagaggctctatacagtagagaggctatatacagtagagaggctctatacagtagaggctatatacagtagagaggttatatacagtagagaggttatatacagtagagaggttatatacagtagagaggctatatacagtagagaggctctatacagtagagaggctatatacagtagagaggctacatacagacacccgttagtcaggctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948108 lncRNA downstream 43573 3235497 ~ 3237529 (-) False G1702104
TU1948109 lncRNA downstream 43573 3235497 ~ 3237529 (-) False G1702104
TU1948110 lncRNA downstream 43573 3235497 ~ 3237529 (-) False G1702104
TU1948111 lncRNA downstream 43573 3235497 ~ 3237529 (-) False G1702104
TU1948112 lncRNA downstream 43573 3235497 ~ 3237529 (-) True G1702104
TU1948252 lncRNA upstream 6648 3525025 ~ 3525267 (-) True G1702215
TU1948298 lncRNA upstream 10702 3529079 ~ 3529321 (-) True G1702221
TU1948299 lncRNA upstream 11300 3529677 ~ 3529896 (-) True G1702222
TU1948302 lncRNA upstream 18835 3537212 ~ 3537451 (-) True G1702225
TU1948196 lncRNA upstream 45147 3563524 ~ 3565402 (-) False G1702172
XR_005038457.1 mRNA downstream 250634 3029349 ~ 3030468 (-) True LOC118942830
XM_036956605.1 mRNA downstream 1057902 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 1057916 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 1122146 2150983 ~ 2158956 (-) True LOC118942828
XM_036956601.1 mRNA downstream 1131391 2143995 ~ 2149711 (-) True LOC118942827
XM_036956625.1 mRNA upstream 70153 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 70153 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 70153 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 70153 3588530 ~ 3998526 (-) False LOC110499739
XM_036956619.1 mRNA upstream 70153 3588530 ~ 3998526 (-) False LOC110499739
TU1948127 other downstream 51061 3229002 ~ 3230041 (-) True G1702117
TU1947895 other downstream 451520 2783942 ~ 2829582 (-) True G1701930
TU1947726 other downstream 705841 2572674 ~ 2575261 (-) False G1701824
TU1946724 other downstream 1091436 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 1157215 2122529 ~ 2123887 (-) True LOC110512520
TU1948253 other upstream 67487 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 67487 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other upstream 67487 3585864 ~ 3588587 (-) False LOC110499739
TU1949213 other upstream 923872 4442249 ~ 4444919 (-) False G1702914
TU1949475 other upstream 1413837 4932214 ~ 4933989 (-) False LOC118936570

Expression Profile