RNA id: TU1948163


Basic Information

Item Value
RNA id TU1948163
length 777
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G1702147
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3307661 ~ 3314262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtctggtctaactctctatgtgtctgtctggtctaactctctaatgtgtctgtctggtctaactctctatgtgtctgtctggtctaactctctatgtgtctgtctggtctaactctccatgtgtctgtctgGTTCACACGTTGATAGGAGCTGTTAAATCACAGGCAGACTGTAGGCAGGTATTACTTTGCCTGAGGGCTTTCTGCCTCTTCAGATGCTGCACATTGATTTGAGCAaccaacacagagtaacaacactacaacactacaacactacaacactacaacactacagcactacagcactacaacactacaacactacagcactacaacactacaacactacaacacagagtaacaacactgcaacactacaacactacaaccctacaacactacaacactacaacactacagcactacaacactacaacactacagcactacaacactacaacactacaatacagactaacaacactacaacacgacaacactacaacactacagcactacaatacagagtaacaacactacaacactacaatacagagtaacaacactacaacactacaacacagagtaacactacaacactacaacactacaacactacaacacagagtaacaacactacaacactataccactacaacactacattactacaacactacaacactacaacacagagtaacaacactacaacactacaacacagagtaacaacactacaacactacaacaaaacaacactacaatacagagtaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948108 lncRNA downstream 70132 3235497 ~ 3237529 (-) False G1702104
TU1948199 lncRNA upstream 76888 3391150 ~ 3391890 (-) False G1702174
TU1948200 lncRNA upstream 76888 3391150 ~ 3438393 (-) True G1702174
TU1948231 lncRNA upstream 147050 3461312 ~ 3461758 (-) True G1702200
TU1948234 lncRNA upstream 151116 3465378 ~ 3467039 (-) True G1702201
TU1948244 lncRNA upstream 188351 3502613 ~ 3503512 (-) True G1702209
XR_005038457.1 mRNA downstream 277193 3029349 ~ 3030468 (-) True LOC118942830
XM_036956605.1 mRNA downstream 1084461 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 1084475 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 1148705 2150983 ~ 2158956 (-) True LOC118942828
XM_036956601.1 mRNA downstream 1157950 2143995 ~ 2149711 (-) True LOC118942827
XM_036956625.1 mRNA upstream 274268 3588530 ~ 3845993 (-) False LOC110499739
XM_036956626.1 mRNA upstream 274268 3588530 ~ 3998524 (-) False LOC110499739
XM_036956627.1 mRNA upstream 274268 3588530 ~ 3998525 (-) False LOC110499739
XM_036956617.1 mRNA upstream 274268 3588530 ~ 3998526 (-) False LOC110499739
XM_036956619.1 mRNA upstream 274268 3588530 ~ 3998526 (-) False LOC110499739
TU1948127 other downstream 77620 3229002 ~ 3230041 (-) True G1702117
TU1947895 other downstream 478079 2783942 ~ 2829582 (-) True G1701930
TU1947726 other downstream 732400 2572674 ~ 2575261 (-) False G1701824
TU1946724 other downstream 1117995 2188433 ~ 2189666 (-) True G1701041
TU1946685 other downstream 1183774 2122529 ~ 2123887 (-) True LOC110512520
TU1948253 other upstream 271602 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other upstream 271602 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other upstream 271602 3585864 ~ 3588587 (-) False LOC110499739
TU1949213 other upstream 1127987 4442249 ~ 4444919 (-) False G1702914
TU1949475 other upstream 1617952 4932214 ~ 4933989 (-) False LOC118936570

Expression Profile