RNA id: TU1947321


Basic Information

Item Value
RNA id TU1947321
length 297
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1701523
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3521294 ~ 3521821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTAGCACCTATCAGGAGCACTAGAGAGCTGTTATACACAGAACAGCACTCTGACTAGGACCTATCAGGAGCACTAGAGAGCTGTTATACACAGAACAGAACTCTGACTAGGAGGTGTTATACACAGAACAGCACTCTGACTAGGAGCTGTTATACACAGAACAGAACTCTGACTAGGAGGTGTTATACACAGAACAGCACACTGACTAGGAGGTGTTATACACAGAACAGTACTCTGACTAGGAGGTGTTATACACAGAACAGCACTCTGACTAGGAGGTGTTACACACAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947292 lncRNA upstream 54255 3439013 ~ 3467039 (+) True G1701501
TU1947299 lncRNA upstream 77881 3443031 ~ 3443413 (+) True G1701502
TU1947287 lncRNA upstream 87427 3433399 ~ 3433867 (+) True G1701498
TU1947260 lncRNA upstream 143944 3374967 ~ 3377350 (+) True G1701474
TU1947238 lncRNA upstream 191170 3329819 ~ 3330124 (+) True G1701456
TU1947325 lncRNA downstream 810 3522631 ~ 3523063 (+) True G1701524
TU1947328 lncRNA downstream 5626 3527447 ~ 3527657 (+) True G1701527
TU1947332 lncRNA downstream 20421 3542242 ~ 3542473 (+) True G1701531
TU1947333 lncRNA downstream 20807 3542628 ~ 3542829 (+) True G1701532
TU1947345 lncRNA downstream 31241 3553062 ~ 3553618 (+) True G1701536
XM_036956615.1 mRNA upstream 129700 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 283722 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 284938 2819887 ~ 3236356 (+) False LOC110499725
XM_036958449.1 mRNA upstream 789481 2730641 ~ 2731813 (+) True LOC118942987
XR_005038455.1 mRNA upstream 854016 2588642 ~ 2667278 (+) False LOC110519348
NM_001281404.1 mRNA downstream 21831 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 43818 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 862195 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 862195 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 862195 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 671691 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 867675 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1651740 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 252218 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 410966 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 410966 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 412109 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 862235 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile