RNA id: TU1947325


Basic Information

Item Value
RNA id TU1947325
length 253
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1701524
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3522631 ~ 3523063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACTGTATCTCACTCTACAGTATCTCACTCTACAGTATCTCACTCTACAGTATCTCACTCTACTGTATCTCACTCTACTGTATCTCACTCTACAGTATCTCACTCTACAGTATCTCActctacagtatctcACTCTACAGTATCTCACTCTACTGTATCTTACTCTACAGTATCTCACTCTACTGTATCTCACTCTACAGTATCTCACTCTACAGTATCTCACTCTACAGTGTCTCACTCTACAGTATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947321 lncRNA upstream 810 3521294 ~ 3521821 (+) True G1701523
TU1947292 lncRNA upstream 55592 3439013 ~ 3467039 (+) True G1701501
TU1947299 lncRNA upstream 79218 3443031 ~ 3443413 (+) True G1701502
TU1947287 lncRNA upstream 88764 3433399 ~ 3433867 (+) True G1701498
TU1947260 lncRNA upstream 145281 3374967 ~ 3377350 (+) True G1701474
TU1947328 lncRNA downstream 4384 3527447 ~ 3527657 (+) True G1701527
TU1947332 lncRNA downstream 19179 3542242 ~ 3542473 (+) True G1701531
TU1947333 lncRNA downstream 19565 3542628 ~ 3542829 (+) True G1701532
TU1947345 lncRNA downstream 29999 3553062 ~ 3553618 (+) True G1701536
TU1947349 lncRNA downstream 60520 3583583 ~ 3586176 (+) True G1701538
XM_036956615.1 mRNA upstream 131037 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 285059 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 286275 2819887 ~ 3236356 (+) False LOC110499725
XM_036958449.1 mRNA upstream 790818 2730641 ~ 2731813 (+) True LOC118942987
XR_005038455.1 mRNA upstream 855353 2588642 ~ 2667278 (+) False LOC110519348
NM_001281404.1 mRNA downstream 20589 3543652 ~ 3562592 (+) True irak3
XM_036956616.1 mRNA downstream 42576 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 860953 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 860953 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 860953 4384016 ~ 4441236 (+) False LOC110516816
TU1947013 other upstream 673028 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 869012 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1653077 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 250976 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 409724 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 409724 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 410867 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 860993 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile