RNA id: TU1947345


Basic Information

Item Value
RNA id TU1947345
length 523
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1701536
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3553062 ~ 3553618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTGAGTACATTAGATTGCTGAGTACATTAGATTGCTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTGCTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTGCTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTACTGAGTACATTAGATTGTTTCAGTAGGAATGGTATTCATCGTGCTATGTTGGTACTACTATCACACGTTCTTATGTCAAAACATCACACCTCTGGTCCACAACAGACTGATGTGTTCAGATGGTCCCTAGTTACAACAGACTGATGTGTTGAGATGGTCCCTAGTTACAACAGACGGTTGTGTTGAGATGGTCCCTAGTTACAACAGACCCATAAATAATATTGAGGGCATTATCCTATGAAACATCCTATGAGAGTAAGCTTCTGAGAGGTATTCAATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947333 lncRNA upstream 10233 3542628 ~ 3542829 (+) True G1701532
TU1947332 lncRNA upstream 10589 3542242 ~ 3542473 (+) True G1701531
TU1947328 lncRNA upstream 25405 3527447 ~ 3527657 (+) True G1701527
TU1947325 lncRNA upstream 29999 3522631 ~ 3523063 (+) True G1701524
TU1947321 lncRNA upstream 31241 3521294 ~ 3521821 (+) True G1701523
TU1947349 lncRNA downstream 29965 3583583 ~ 3586176 (+) True G1701538
TU1947372 lncRNA downstream 93718 3647336 ~ 3647677 (+) True G1701560
TU1947403 lncRNA downstream 209201 3762819 ~ 3763192 (+) True G1701591
TU1947412 lncRNA downstream 217872 3771490 ~ 3772245 (+) True G1701595
TU1947429 lncRNA downstream 236339 3789957 ~ 3790933 (+) True G1701602
XM_036956615.1 mRNA upstream 161468 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 315490 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 316706 2819887 ~ 3236356 (+) False LOC110499725
XM_036958449.1 mRNA upstream 821249 2730641 ~ 2731813 (+) True LOC118942987
XR_005038455.1 mRNA upstream 885784 2588642 ~ 2667278 (+) False LOC110519348
XM_036956616.1 mRNA downstream 12021 3565639 ~ 3583498 (+) True helb
XM_036956628.1 mRNA downstream 830398 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 830398 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 830398 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 897498 4451116 ~ 4475091 (+) False si:dkey-39a18.1
TU1947013 other upstream 703459 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 899443 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1683508 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 220421 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 379169 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 379169 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 380312 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 830438 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile