RNA id: TU1947349


Basic Information

Item Value
RNA id TU1947349
length 1011
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1701538
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3583583 ~ 3586176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttaaggagccttttggacttgatgctccggtaccacttgccgtgcggtagcagagagaaccgtctatgactggggtggctggagtctatttttaggcccttcctctgacaccgcctggtatagaggtcctggatggcaggaagctcggccccagtgatgtactgggccgtacccactTCCCTCTGtggcgccttgcggtcggaatcccctccggcgccatcatTAGACAGGAAACTGCATTACTATctgtttattttaaatgttttaattgcTATACATCTGGGCTTGTATCATTTTATTGATCAAGAGCCTCAGATGAGATCATTTCATCAGTTTGTTTGCAATCAAATCAGccatgttgtttatttttccactctgtaaatcacctcagccatgttgttgtctttccactctgtaaatcacctcagccatgttgtttgtctttccactctgtaaatcacctcagccatgttgtttatttttccactctgtaaatcacctcagccatgttgttatttttccactctgtaaatcacctcagccatgttgttgtcttcccactctgtaaatcacctcagccatgttgtttatttttccactctgtaaatcacctcagccatgttgttgtcttcccactctgtaaatcacctcagccatgttgtttatttttccactctgtaaatcacctcagccatgttatttttccactctgtaaatcaTTTTTTATTGTTTCTCTTTTCTCGGCCATACAAAGGTTTACAGCTGGAGGAATTCCCAAAGTTATACATAGACGATAAATATCATGCTACCAAAGTATTAAATTTGTACAAAAATACTTTTACAGGTCATAATACCGGTCCAttagaaataaaaatacaatttttcAGGGACTTAAACAGTGAGTTTCTTTAACTGTATCATACATTGAATGATGGTTGACCCCACTATGGTAATTGGCAGTGTGTACTCCAGTATTAAGAACAGAAAAATGACCACTCCACCTGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947345 lncRNA upstream 29965 3553062 ~ 3553618 (+) True G1701536
TU1947333 lncRNA upstream 40754 3542628 ~ 3542829 (+) True G1701532
TU1947332 lncRNA upstream 41110 3542242 ~ 3542473 (+) True G1701531
TU1947328 lncRNA upstream 55926 3527447 ~ 3527657 (+) True G1701527
TU1947325 lncRNA upstream 60520 3522631 ~ 3523063 (+) True G1701524
TU1947372 lncRNA downstream 61160 3647336 ~ 3647677 (+) True G1701560
TU1947403 lncRNA downstream 176643 3762819 ~ 3763192 (+) True G1701591
TU1947412 lncRNA downstream 185314 3771490 ~ 3772245 (+) True G1701595
TU1947429 lncRNA downstream 203781 3789957 ~ 3790933 (+) True G1701602
TU1947449 lncRNA downstream 270591 3856767 ~ 3858063 (+) True G1701621
XM_036956616.1 mRNA upstream 85 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 20991 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 191989 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 346011 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 347227 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 797840 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 797840 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 797840 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 864940 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 864943 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947013 other upstream 733980 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 929964 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1714029 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 187863 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 346611 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 346611 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 347754 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 797880 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile