RNA id: TU1947372


Basic Information

Item Value
RNA id TU1947372
length 250
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1701560
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3647336 ~ 3647677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgggtttgaccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttcaatatttTTGGAAAGTAAATCATTGAAAAAATGGTGTGCCAGTTTGATACCAGCAGAGCCCCTCTATTACAAGGTGGCTGGGAAAGTAATGTCAGTTTGATACCAGCAGAGCCCCTCTATTACAAGGTGGCTGGGAAAGTAATGTCAGTCTGATACCAGCAGAGCCCCTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947349 lncRNA upstream 61160 3583583 ~ 3586176 (+) True G1701538
TU1947345 lncRNA upstream 93718 3553062 ~ 3553618 (+) True G1701536
TU1947333 lncRNA upstream 104507 3542628 ~ 3542829 (+) True G1701532
TU1947332 lncRNA upstream 104863 3542242 ~ 3542473 (+) True G1701531
TU1947328 lncRNA upstream 119679 3527447 ~ 3527657 (+) True G1701527
TU1947403 lncRNA downstream 115142 3762819 ~ 3763192 (+) True G1701591
TU1947412 lncRNA downstream 123813 3771490 ~ 3772245 (+) True G1701595
TU1947429 lncRNA downstream 142280 3789957 ~ 3790933 (+) True G1701602
TU1947449 lncRNA downstream 209090 3856767 ~ 3858063 (+) True G1701621
TU1947468 lncRNA downstream 238242 3885919 ~ 3887547 (+) True G1701638
XM_036956616.1 mRNA upstream 63838 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 84744 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 255742 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 409764 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 410980 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 736339 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 736339 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 736339 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 803439 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 803442 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947013 other upstream 797733 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 993717 2639340 ~ 2653619 (+) False LOC110519348
TU1945284 other upstream 1777782 1867694 ~ 1869554 (+) False G1699934
TU1947414 other downstream 126362 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 285110 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 285110 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 286253 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 736379 4384056 ~ 4400981 (+) True LOC110516816

Expression Profile