RNA id: TU1948395


Basic Information

Item Value
RNA id TU1948395
length 1120
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G1702303
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3816826 ~ 3857895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggatttgaacttgcaaccttccggttactagcccaatgctctaaccactaggctaccctgccgccccagtagtCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTCTGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAATAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTCCGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACCCAGTAGTCTTAATGAGTACAGTAGTACTAGTctatatctttctctttctctctctctctctctttctccctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948389 lncRNA downstream 18415 3797949 ~ 3798411 (-) True G1702297
TU1948388 lncRNA downstream 19193 3797382 ~ 3797633 (-) True G1702296
TU1948355 lncRNA downstream 108694 3707263 ~ 3708132 (-) True G1702266
TU1948349 lncRNA downstream 141717 3674706 ~ 3675109 (-) True G1702261
TU1948332 lncRNA downstream 202906 3613653 ~ 3613920 (-) True G1702247
TU1948456 lncRNA upstream 64624 3922519 ~ 3923386 (-) False G1702354
TU1948455 lncRNA upstream 65026 3922921 ~ 3923386 (-) True G1702354
TU1948470 lncRNA upstream 99601 3957496 ~ 3959208 (-) True G1702366
TU1948471 lncRNA upstream 101503 3959398 ~ 3959976 (-) True G1702367
TU1948490 lncRNA upstream 131766 3989661 ~ 3990204 (-) True G1702383
XR_005038457.1 mRNA downstream 786358 3029349 ~ 3030468 (-) True LOC118942830
XM_036956605.1 mRNA downstream 1593626 2190139 ~ 2223200 (-) True LOC110499718
XM_036956604.1 mRNA downstream 1593640 2190139 ~ 2223186 (-) False LOC110499718
XM_036956606.1 mRNA downstream 1657870 2150983 ~ 2158956 (-) True LOC118942828
XM_036956601.1 mRNA downstream 1667115 2143995 ~ 2149711 (-) True LOC118942827
trnav-uac-23 mRNA upstream 355997 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956639.1 mRNA upstream 753987 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 753987 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 753987 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 753987 4611882 ~ 4636535 (-) False LOC110499732
TU1948253 other downstream 228239 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 228239 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 228239 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 298449 3281102 ~ 3518377 (-) True G1702141
TU1948127 other downstream 586785 3229002 ~ 3230041 (-) True G1702117
TU1949213 other upstream 584354 4442249 ~ 4444919 (-) False G1702914
TU1949475 other upstream 1074319 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 1074319 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 1074319 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 1088703 4946598 ~ 4947411 (-) True G1703085

Expression Profile